Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002983`

染色体: Chr08 坐标: 29935055-29938462 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002983`
名称	SmilChr08G002983
描述	heat shock cognate 70 kDa protein 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	29935055 - 29938462 / `-`

ID 对照

NCBI Gene ID	`LOC130997578`
GeneID	`130997578`
locus_tag	`-`
NCBI Name	`LOC130997578`
原始查询	`LOC130997578`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	heat shock cognate 70 kDa protein 2-like
产物	heat shock cognate 70 kDa protein 2-like
Arabidopsis	`AT5G02500` (HSC70-1) heat shock cognate protein 70-1 [Source:NCBI gene (formerly Entrezgene);Acc:831020] identity=92; qcov=1.01; evalue=0; confidence=high
Rice	`Os11g0703900` (HSP70) - identity=94.6; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0016887 (ATP hydrolysis activity); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro	-
eggNOG	-
NR	GeneID:130997578

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057778923.1`
2	Cytosol	细胞质基质	1.00000	`XP_057778923.1`
3	Nucleus	细胞核	0.80000	`XP_057778923.1`
4	Nucleoplasm	核质	0.60000	`XP_057778923.1`
5	Midbody	Midbody	0.20000	`XP_057778923.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:29935375`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:29935421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:29935430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A24,B95,C40
`Chr8:29935586`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B111,B132,B50,C29
`Chr8:29935871`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr8:29935886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B73,B95,C37
`Chr8:29935893`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B73,B75,B76,B95,C37
`Chr8:29936102`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:29936196`	`A`	`AGC`	2bp_insertion	frameshift_variant	80	A10,A13,A16,A19,A21,A6,B10,B101,B103,B104,B107,B11,B110,B114,B115,B121,B122,B125,B127,B130,B17,B19,B21,B22,B24,B27,B28,B29,B32,B33,B36,B37,B40,B41,B43,B44,B50,B51,B59,B62,B63,B66,B70,B75,B76,B78,B79,B8,B84,B86,B9,B94,B95,B96,C1,C10,C11,C12,C14,C22,C26,C33,C34,C39,C47,C51,C56,C58,C6,C63,C65,C68,C69,C7,C70,C71,C74,C84,C87,D7
`Chr8:29936198`	`AAG`	`A`	2bp_deletion	frameshift_variant	79	A10,A13,A16,A19,A21,A6,B10,B101,B103,B104,B107,B11,B110,B114,B115,B121,B122,B125,B127,B130,B17,B19,B21,B22,B24,B27,B28,B29,B32,B33,B36,B37,B40,B41,B43,B44,B50,B51,B59,B62,B63,B66,B70,B75,B76,B78,B79,B8,B84,B86,B9,B94,B95,B96,C1,C10,C12,C14,C22,C26,C33,C34,C39,C47,C51,C56,C58,C6,C63,C65,C68,C69,C7,C70,C71,C74,C84,C87,D7
`Chr8:29936471`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B106,B26,B85,C8
`Chr8:29936564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778923.1

647 aa

324

647

HSP70

MreB_Mbl

PF00012 HSP70 9-618 aa PF06723 MreB_Mbl 141-380 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778923.1`	Pfam	`PF00012`	HSP70	Family	9	618	4.4e-262	871.4	Hsp70 protein
`XP_057778923.1`	Pfam	`PF06723`	MreB_Mbl	Family	141	380	3.9e-13	49.7	MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922940.1
AAACCCTCTACTCGCTGGAAAAGTTGAATGAATCATCACCGTTGATTACTTCTCCGCAACCCATCCAACGGCTACCAAGTAATTCTTTGTTTCGAACATTCTGGAATGCGAAACCCGAGCAACTGCATGCAGTATATATTCTCCCGACTTGTACTTCTCCTACTCTTATAAAATAAACCCTAACCCGCCTCAATTTTGTTCTTCTGTCTCTGTAAACGACATTTTTTTGTGTAGCCAAATTCTTCAGATCTAGTGTTAGA...

CDS

1 records

下载 CDS FASTA

LOC130997578
ATGGCAGGAAAAGGAGAGGGTCCGGCGATCGGGATCGATCTCGGTACGACGTACTCGTGCGTCGGTGTCTGGCAGCACGACCGCGTAGAGATCATCGCCAATGACCAGGGCAACAGGACCACGCCGTCTTACGTCGGTTTCACTGATACCGAGAGGCTAATTGGTGATGCGGCTAAGAATCAGGTCGCCATGAACCCTACCAACACTGTTTTCGATGCCAAGAGGTTGATTGGTAGGAGATTCAGTGATGCCTCTGTGCA...

Protein

1 records

下载 Protein FASTA

XP_057778923.1
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQSDIKLWPFKVIPGPAEKPMIVVSYKGEDKQFAAEEISSMVLMKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDIN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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