Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002994`

染色体: Chr08 坐标: 30044618-30048488 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002994`
名称	SmilChr08G002994
描述	pentatricopeptide repeat-containing protein At3g53700, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	30044618 - 30048488 / `-`

ID 对照

NCBI Gene ID	`LOC130997591`
GeneID	`130997591`
locus_tag	`-`
NCBI Name	`LOC130997591`
原始查询	`LOC130997591`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g53700, chloroplastic
产物	pentatricopeptide repeat-containing protein At3g53700%2C chloroplastic
Arabidopsis	`AT3G53700` (MEE40) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824537] identity=66.5; qcov=1; evalue=0; confidence=high
Rice	`Os03g0597200` (YSA) - identity=54.5; qcov=0.908; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:130997591

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057778939.1`
2	Chloroplast	叶绿体	0.40000	`XP_057778939.1`
3	Nucleus	细胞核	0.00000	`XP_057778939.1`
4	Chromosome	染色体	0.00000	`XP_057778939.1`
5	Centromere	着丝粒	0.00000	`XP_057778939.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:30044972`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B11,C1
`Chr8:30045097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:30045678`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:30045801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B40,C83,D4
`Chr8:30045871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr8:30046244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B40,C83,D4
`Chr8:30046494`	`GA`	`G`	1bp_deletion	frameshift_variant	21	A22,A9,B113,B118,B139,B36,B45,B78,B81,B89,B91,C1,C35,C41,C44,C59,C6,C65,C9,D10,D8
`Chr8:30046501`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:30046519`	`CCA`	`C`	2bp_deletion	frameshift_variant	23	A22,A9,B113,B118,B139,B22,B36,B45,B50,B78,B81,B89,B91,C1,C35,C41,C44,C59,C6,C65,C9,D10,D8
`Chr8:30046551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C65,C82
`Chr8:30046866`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:30046984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B121,B13,B46,B79,C49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057778939.1

768 aa

384

768

TPR_24

PPR

PPR_3

PPR_2

PPR

PPR_long

PPR_1

PPR_2

PPR

PPR_3

PPR

PPR_2

PPR_1

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

TPR_24

PPR_long

PPR_1

PPR

PPR_2

PPR_long

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR_2

PPR

TPR_24

PPR

PPR_2

PF23276 TPR_24 104-225 aa PF01535 PPR 138-161 aa PF13812 PPR_3 164-214 aa PF13041 PPR_2 167-216 aa PF01535 PPR 171-200 aa PF17177 PPR_long 191-315 aa PF12854 PPR_1 199-230 aa PF13041 PPR_2 202-249 aa PF01535 PPR 205-235 aa PF13812 PPR_3 226-284 aa PF01535 PPR 241-267 aa PF13041 PPR_2 241-286 aa PF13041 PPR_2 274-321 aa PF12854 PPR_1 275-301 aa PF01535 PPR 275-305 aa PF13812 PPR_3 297-352 aa PF12854 PPR_1 304-335 aa PF13041 PPR_2 307-356 aa PF01535 PPR 310-340 aa PF17177 PPR_long 321-467 aa PF13812 PPR_3 338-389 aa PF12854 PPR_1 339-370 aa PF13041 PPR_2 342-391 aa PF01535 PPR 345-375 aa PF23276 TPR_24 347-438 aa PF12854 PPR_1 373-401 aa PF13041 PPR_2 377-425 aa PF01535 PPR 380-410 aa PF13812 PPR_3 402-458 aa PF12854 PPR_1 408-441 aa PF13041 PPR_2 412-460 aa PF01535 PPR 415-445 aa PF23276 TPR_24 431-540 aa PF17177 PPR_long 433-519 aa PF12854 PPR_1 443-476 aa PF01535 PPR 450-480 aa PF13041 PPR_2 450-494 aa PF17177 PPR_long 465-608 aa PF13812 PPR_3 470-527 aa PF12854 PPR_1 479-511 aa PF13041 PPR_2 483-531 aa PF01535 PPR 485-515 aa PF12854 PPR_1 514-544 aa PF13041 PPR_2 518-561 aa PF01535 PPR 520-549 aa PF13812 PPR_3 541-597 aa PF12854 PPR_1 549-580 aa PF01535 PPR 555-585 aa PF13041 PPR_2 555-601 aa PF12854 PPR_1 583-613 aa PF13041 PPR_2 587-628 aa PF01535 PPR 590-619 aa PF23276 TPR_24 601-704 aa PF01535 PPR 626-654 aa PF13041 PPR_2 626-670 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057778939.1`	Pfam	`PF23276`	TPR_24	Repeat	104	225	2.7e-51	173.6	Pentatricopeptide repeat-containing protein
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	138	161	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13812`	PPR_3	Repeat	164	214	2.8e-75	249.0	Pentatricopeptide repeat domain
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	167	216	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	171	200	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF17177`	PPR_long	Repeat	191	315	1.6e-44	152.5	Pentacotripeptide-repeat region of PRORP
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	199	230	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	202	249	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	205	235	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13812`	PPR_3	Repeat	226	284	2.8e-75	249.0	Pentatricopeptide repeat domain
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	241	267	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	241	286	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	274	321	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	275	301	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	275	305	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13812`	PPR_3	Repeat	297	352	2.8e-75	249.0	Pentatricopeptide repeat domain
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	304	335	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	307	356	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	310	340	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF17177`	PPR_long	Repeat	321	467	1.6e-44	152.5	Pentacotripeptide-repeat region of PRORP
`XP_057778939.1`	Pfam	`PF13812`	PPR_3	Repeat	338	389	2.8e-75	249.0	Pentatricopeptide repeat domain
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	339	370	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	342	391	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	345	375	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF23276`	TPR_24	Repeat	347	438	2.7e-51	173.6	Pentatricopeptide repeat-containing protein
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	373	401	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	377	425	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	380	410	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13812`	PPR_3	Repeat	402	458	2.8e-75	249.0	Pentatricopeptide repeat domain
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	408	441	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	412	460	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	415	445	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF23276`	TPR_24	Repeat	431	540	2.7e-51	173.6	Pentatricopeptide repeat-containing protein
`XP_057778939.1`	Pfam	`PF17177`	PPR_long	Repeat	433	519	1.6e-44	152.5	Pentacotripeptide-repeat region of PRORP
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	443	476	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	450	480	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	450	494	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF17177`	PPR_long	Repeat	465	608	1.6e-44	152.5	Pentacotripeptide-repeat region of PRORP
`XP_057778939.1`	Pfam	`PF13812`	PPR_3	Repeat	470	527	2.8e-75	249.0	Pentatricopeptide repeat domain
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	479	511	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	483	531	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	485	515	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	514	544	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	518	561	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	520	549	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13812`	PPR_3	Repeat	541	597	2.8e-75	249.0	Pentatricopeptide repeat domain
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	549	580	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	555	585	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	555	601	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF12854`	PPR_1	Repeat	583	613	5.4e-160	519.5	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	587	628	2.7e-200	649.2	PPR repeat family
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	590	619	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF23276`	TPR_24	Repeat	601	704	2.7e-51	173.6	Pentatricopeptide repeat-containing protein
`XP_057778939.1`	Pfam	`PF01535`	PPR	Repeat	626	654	2.6e-115	369.6	PPR repeat
`XP_057778939.1`	Pfam	`PF13041`	PPR_2	Repeat	626	670	2.7e-200	649.2	PPR repeat family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057922956.1
ACATTATTTGTGAGAATGTGAGAACAATCAAATCTAATGCATCCACTGTAAAAATTAATGCATTCGCTGTTAAAATTAATGCACTCAAAACAATAAAAAAAATTGCTCCCTTCAGGATTCGAACCCTGGATATGCATTCATCCAACAAGATGATGCATCCATCGTAGATCTTGATGATCGAATTGCTGAAAATGGTTCTCCGTTCTTTTATTTAGTGGTTCTTTCTTGAACCTCTCCCTATATAAATAAGAGATATTTAT...

CDS

1 records

下载 CDS FASTA

LOC130997591
ATGGCTTTCTCTTCTTGTCTCAAGTGCCACCCATGGACTTCCTCTCACAATCTCAACCATCATCACATTTCAAACCCCGCAAACTTAATCACATTACAATTTTCGAGAAATTCAGCAAAACGGCGGTCCCCAAAGCTCTCATTTGCTGTCTCCTCAGCTATATCTAACGTTCTACTCTCGCCGGACTTCACCCCAAAGCAACTTTTGGACTGTCTTCGCGGCGAAGAGGATGAAAAATCGGCCCTCCGCCTCTTCCAGTG...

Protein

1 records

下载 Protein FASTA

XP_057778939.1
MAFSSCLKCHPWTSSHNLNHHHISNPANLITLQFSRNSAKRRSPKLSFAVSSAISNVLLSPDFTPKQLLDCLRGEEDEKSALRLFQWASGQPNFVPALPIYEEIIGKLGNAGSFDSVRQVLNHMKHSKIDVVEGIFFILIGSYAKFELYDEAIGVLDVMEKEFGVRPGTHTYNFLLNVLVDGNKLILVESVHSKMINCGVKPDVSTFNILIKALCKAHQIRPAILLMEEMPKYGLAPDEKTFTTIMQGYIEEGNLEGALR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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