当前解析结果
SmilChr08G003009| 统一新 Gene ID | SmilChr08G003009 |
|---|---|
| 名称 | SmilChr08G003009 |
| 描述 | kinesin-like protein KIN-5B |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 30199194 - 30205891 / - |
| NCBI Gene ID | LOC130997609 |
|---|---|
| GeneID | 130997609 |
| locus_tag | - |
| NCBI Name | LOC130997609 |
| 原始查询 | LOC130997609 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-5B |
| 产物 | kinesin-like protein KIN-5B |
| Arabidopsis | AT2G37420 (AT2G37420)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:818318] identity=57; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0117798 (KIN5A)- identity=46.7; qcov=0.993; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding); GO:0008574 (plus-end-directed microtubule motor activity) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997609 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057778967.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057778967.1 |
| 3 | Spindle pole | Spindle pole | 1.00000 | XP_057778967.1 |
| 4 | Chromosome | 染色体 | 0.80000 | XP_057778967.1 |
| 5 | Centrosome | 中心体 | 0.60000 | XP_057778967.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:30200175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:30200217 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr8:30200633 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A21 |
Chr8:30200633 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A21 |
Chr8:30200838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:30201280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B101 |
Chr8:30201695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B105,B106 |
Chr8:30201759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B60,B98,C32,C68,C80 |
Chr8:30203203 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | B82 |
Chr8:30203203 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | B82 |
Chr8:30203511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C22,D4 |
Chr8:30203750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057778967.1PF16796
Microtub_bd 49-201 aa
PF00225
Kinesin 57-393 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778967.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 49 | 201 | 5.6e-25 | 88.8 | Microtubule binding |
XP_057778967.1 |
Pfam | PF00225 |
Kinesin | Domain | 57 | 393 | 5.9e-113 | 377.9 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。