当前解析结果
SmilChr08G003076| 统一新 Gene ID | SmilChr08G003076 |
|---|---|
| 名称 | SmilChr08G003076 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g67720 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 30950739 - 30958661 / + |
| NCBI Gene ID | LOC130997626 |
|---|---|
| GeneID | 130997626 |
| locus_tag | - |
| NCBI Name | LOC130997626 |
| 原始查询 | LOC130997626 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g67720 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At1g67720 |
| Arabidopsis | AT2G37050 (AT2G37050)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:818281] identity=68.2; qcov=0.99; evalue=0; confidence=high |
| Rice | Os12g0102500- identity=61.8; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997626 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057778995.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057778995.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057778995.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057778995.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057778995.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:30951123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B13,C8,D7 |
Chr8:30951132 |
G |
GCT |
2bp_insertion | frameshift_variant | 1 | D5 |
Chr8:30951132 |
G |
GCT |
2bp_insertion | CDS_variant | 1 | D5 |
Chr8:30952746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B102,C87,D10,D2,D6 |
Chr8:30953442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:30954343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C39,D4 |
Chr8:30955914 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C39,D4 |
Chr8:30957007 |
G |
GCA |
2bp_insertion | frameshift_variant | 2 | A24,B12 |
Chr8:30957007 |
G |
GCA |
2bp_insertion | CDS_variant | 2 | A24,B12 |
Chr8:30958123 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B71,C78 |
Chr8:30958159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C59 |
Chr8:30958219 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057778995.1PF12819
Malectin_like 31-360 aa
PF00560
LRR_1 460-482 aa
PF00560
LRR_1 484-503 aa
PF07714
PK_Tyr_Ser-Thr 599-800 aa
PF00069
Pkinase 599-817 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057778995.1 |
Pfam | PF12819 |
Malectin_like | Domain | 31 | 360 | 8.9e-78 | 262.6 | Malectin-like domain |
XP_057778995.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 460 | 482 | 2.4e-07 | 30.2 | Leucine Rich Repeat |
XP_057778995.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 484 | 503 | 2.4e-07 | 30.2 | Leucine Rich Repeat |
XP_057778995.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 599 | 800 | 1.3e-43 | 149.9 | Protein tyrosine and serine/threonine kinase |
XP_057778995.1 |
Pfam | PF00069 |
Pkinase | Domain | 599 | 817 | 6.4e-42 | 144.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。