当前解析结果
SmilChr08G003043| 统一新 Gene ID | SmilChr08G003043 |
|---|---|
| 名称 | SmilChr08G003043 |
| 描述 | ABC transporter G family member 6-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 30593665 - 30596196 / + |
| NCBI Gene ID | LOC130997633 |
|---|---|
| GeneID | 130997633 |
| locus_tag | - |
| NCBI Name | LOC130997633 |
| 原始查询 | LOC130997633 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 6-like |
| 产物 | ABC transporter G family member 6-like |
| Arabidopsis | AT5G13580 (ABCG6)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:831202] identity=68.3; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0281900 (ABCG5)- identity=59.6; qcov=1.04; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)); smil04981 (Folate transport and metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997633 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779003.1 |
| 2 | Vacuole | 液泡 | 0.80000 | XP_057779003.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057779003.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057779003.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779003.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:30594083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr8:30594141 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,B79 |
Chr8:30594148 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B22 |
Chr8:30594148 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B22 |
Chr8:30594404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,B67,C11,C35 |
Chr8:30594537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:30594635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B114,C15 |
Chr8:30594680 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B107,C57 |
Chr8:30594800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B26,C77 |
Chr8:30594842 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr8:30594982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B1,C16 |
Chr8:30595336 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779003.1PF00005
ABC_tran 101-253 aa
PF01061
ABC2_membrane 409-617 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779003.1 |
Pfam | PF00005 |
ABC_tran | Domain | 101 | 253 | 5.4e-26 | 92.5 | ABC transporter |
XP_057779003.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 409 | 617 | 6.3e-45 | 154.0 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。