Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G003097

染色体: Chr08 坐标: 31154168-31157533 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G003097
名称SmilChr08G003097
描述uncharacterized SmilChr08G003097
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向31154168 - 31157533 / +

ID 对照

NCBI Gene IDLOC130997646
GeneID130997646
locus_tag-
NCBI NameLOC130997646
原始查询LOC130997646

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein [Source:NCBI gene (formerly Entrezgene);Acc:820130]; symbol=AT3G09730; hit=AT3G09730; species=arabidopsis; confidence=medium
产物POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein [Source:NCBI gene (formerly Entrezgene);Acc:820130]; symbol=AT3G09730; hit=AT3G09730; species=arabidopsis; confidence=medium
ArabidopsisAT3G09730 (AT3G09730)
POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein [Source:NCBI gene (formerly Entrezgene);Acc:820130]
identity=36; qcov=1.01; evalue=2.02e-44; confidence=medium
Rice-
-
GOGO:0008356 (asymmetric cell division)
KEGG-
PfamPF30915 (POLAR)
InterPro-
eggNOG-
NRGeneID:130997646

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus membrane 核膜 0.60000 XP_057779022.1
2 Nucleus 细胞核 0.20000 XP_057779022.1
3 Mitochondrion 线粒体 0.20000 XP_057779022.1
4 Chromosome 染色体 0.00000 XP_057779022.1
5 Centromere 着丝粒 0.00000 XP_057779022.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:31154397 G A EMS_canonical_SNV CDS_variant 1 B139
Chr8:31154447 C T EMS_canonical_SNV CDS_variant 1 C87
Chr8:31154606 C T EMS_canonical_SNV CDS_variant 1 C39
Chr8:31154620 C T EMS_canonical_SNV CDS_variant 1 B32
Chr8:31154684 G A EMS_canonical_SNV CDS_variant 1 C59
Chr8:31154731 G A EMS_canonical_SNV CDS_variant 1 C39
Chr8:31155912 C T EMS_canonical_SNV CDS_variant 5 B13,B15,C15,C8,D7
Chr8:31156023 G A EMS_canonical_SNV CDS_variant 1 B101
Chr8:31156037 G A EMS_canonical_SNV CDS_variant 1 B101
Chr8:31156068 C T EMS_canonical_SNV CDS_variant 1 B46
Chr8:31156179 G A EMS_canonical_SNV CDS_variant 2 B15,C15
Chr8:31156920 G A EMS_canonical_SNV CDS_variant 1 A15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057779022.1
430 aa
N
1
215
430
POLAR
C
PF30915 POLAR 137-376 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057779022.1 Pfam PF30915 POLAR Family 137 376 1e-12 48.4 POLAR asymmetric cell division scaffold

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057923039.1
TGCTATAATATTTTATTTAAATTTGAAATGAATAATGAGTGCTAACCTCCACTCTCAGATTCTCACATGCTTCCACCCAACACTTCAAGCTTTCCAGAGTGATGAGTAAATGATCTCTCTCTCTCTAGAATGCAGCTTTCTCTGCTCTCAATGTGTCTATTTCAAAGCTCGGTAGCTGTGTGTGCGATTTAAATTATCAAACACCAAAATGTGGCAAGTCCTAGTAGCAGCAGCGGCAGCGGCAGGATCTGGAATTTTAG...

CDS

1 records

下载 CDS FASTA
LOC130997646
ATGTGGCAAGTCCTAGTAGCAGCAGCGGCAGCGGCAGGATCTGGAATTTTAGCCAAGAAATTCATTACACCCAATGACACTGATTGCAAGCAAAAATACCTAGAATCTGCTGAAACCAAATCTTCGCTGCCACAAGATTTCGTCTTCGAATCAGATGATACATTTAAAGAAAGCAGCAATCAAGAGAAGAGAGAAACCCTCAGCGACGAGGCCGCCATCTTTAGGTTTTCCTGTCCGGAGACGGCGTCTAAGGAACTCAG...

Protein

1 records

下载 Protein FASTA
XP_057779022.1
MWQVLVAAAAAAGSGILAKKFITPNDTDCKQKYLESAETKSSLPQDFVFESDDTFKESSNQEKRETLSDEAAIFRFSCPETASKELRKNTRNGGSKRGKKSAAAEGSRKEVVADQLGNGSGKRVSVCLKKRRTGKHAAGKCESCVSKDNSFGWGVGVGIMYMVSAGTAEISKLNSAMDETVKTVQELKAEISKRKNAQNVNVPVAENEASTNKKFVERSYKDPLFTSVGAKSKENMKAFCLTLTDEGEYASSIITDTQQP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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