Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003069`

染色体: Chr08 坐标: 30876369-30879936 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003069`
名称	SmilChr08G003069
描述	zinc finger CCCH domain-containing protein 11-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	30876369 - 30879936 / `-`

ID 对照

NCBI Gene ID	`LOC130997651`
GeneID	`130997651`
locus_tag	`-`
NCBI Name	`LOC130997651`
原始查询	`LOC130997651`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 11-like
产物	zinc finger CCCH domain-containing protein 11-like
Arabidopsis	`AT2G20280` (AT2G20280) Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:816547] identity=72.4; qcov=1; evalue=3.92e-160; confidence=high
Rice	`Os01g0834700` (OsC3H11) - identity=75.4; qcov=1; evalue=6.8e-180; confidence=high
GO	GO:0002181 (cytoplasmic translation); GO:0003729 (mRNA binding); GO:0005829 (cytosol); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF16543 (DFRP_C)
InterPro	-
eggNOG	-
NR	GeneID:130997651

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779028.1`
2	Cytoplasm	细胞质	1.00000	`XP_057779028.1`
3	Chromosome	染色体	0.00000	`XP_057779028.1`
4	Centromere	着丝粒	0.00000	`XP_057779028.1`
5	Chromatin	染色质	0.00000	`XP_057779028.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:30877528`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B139,B8,C61,C64
`Chr8:30877598`	`C`	`CT`	1bp_insertion	frameshift_variant	1	D11
`Chr8:30877598`	`C`	`CT`	1bp_insertion	CDS_variant	1	D11
`Chr8:30877615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:30878073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39
`Chr8:30878099`	`TG`	`T`	1bp_deletion	frameshift_variant	56	A1,A14,A21,A22,A4,A8,B10,B11,B110,B117,B123,B128,B131,B138,B14,B140,B15,B16,B2,B21,B3,B31,B32,B40,B47,B53,B55,B57,B58,B59,B60,B70,B73,B83,B94,B99,C1,C11,C12,C14,C16,C18,C22,C23,C3,C32,C4,C40,C42,C43,C61,C62,C68,C69,C82,D5
`Chr8:30878174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B107,B122,C39,D4
`Chr8:30878974`	`T`	`TA`	1bp_insertion	frameshift_variant	1	D11
`Chr8:30878974`	`T`	`TA`	1bp_insertion	CDS_variant	1	D11
`Chr8:30879859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B59,B68
`Chr8:30879906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	D10,D2,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779028.1

371 aa

186

371

DFRP_C

PF16543 DFRP_C 217-296 aa

XP_057779029.1

370 aa

185

370

DFRP_C

PF16543 DFRP_C 217-296 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779028.1`	Pfam	`PF16543`	DFRP_C	Domain	217	296	1.5e-19	71.0	DRG Family Regulatory Proteins, Tma46
`XP_057779029.1`	Pfam	`PF16543`	DFRP_C	Domain	217	296	1.9e-19	70.7	DRG Family Regulatory Proteins, Tma46

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923046.1
ATGCCTCCCAAGCAATCGAAAGCGGATATAGCGAAGAAGCAGAAGGTGGTCGAGGACAAAACTTTCGGATTGAAGAACAAGAACAAATCTAAGAATGTACAGAAGTACGTGCAGTCTCTCAAGCAGTCTGGACAGCCCAAACCCGACCCCAGCAAACTCCAAGCACAGAAGAAGAAAGAGGAGGAGAAAGCTAGAGAGAAGGAGCCTAGTGAGTTGTTTAAAGTTGCTGTAAAACAGCCTAAAGTGCCTGTTGGTGTTGA...

XM_057923045.1
ATGCCTCCCAAGCAATCGAAAGCGGATATAGCGAAGAAGCAGAAGGTGGTCGAGGACAAAACTTTCGGATTGAAGAACAAGAACAAATCTAAGAATGTACAGAAGTACGTGCAGTCTCTCAAGCAGTCTGGACAGCCCAAACCCGACCCCAGCAAACTCCAAGCACAGAAGAAGAAAGAGGAGGAGAAAGCTAGAGAGAAGGAGCCTAGTGAGTTGTTTAAAGTTGCTGTAAAACAGCCTAAAGTGCCTGTTGGTGTTGA...

CDS

2 records

下载 CDS FASTA

LOC130997651
ATGCCTCCCAAGCAATCGAAAGCGGATATAGCGAAGAAGCAGAAGGTGGTCGAGGACAAAACTTTCGGATTGAAGAACAAGAACAAATCTAAGAATGTACAGAAGTACGTGCAGTCTCTCAAGCAGTCTGGACAGCCCAAACCCGACCCCAGCAAACTCCAAGCACAGAAGAAGAAAGAGGAGGAGAAAGCTAGAGAGAAGGAGCCTAGTGAGTTGTTTAAAGTTGCTGTAAAACAGCCTAAAGTGCCTGTTGGTGTTGA...

Protein

2 records

下载 Protein FASTA

XP_057779028.1
MPPKQSKADIAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSGQPKPDPSKLQAQKKKEEEKAREKEPSELFKVAVKQPKVPVGVDPKSILCEHFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDTREEEQGTMEDWDQEKLEKVVASKSNEYNNMNKPTDIVCKYFLEAVEKKQYGWFWVCPNGIKECHYRHALPPGYILKSQMKALLEEEAQKITIEEEIENQRAKVSTCTPMTTDLFMQWKKKKVDEREAGLAAQ...

XP_057779029.1
MPPKQSKADIAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSGQPKPDPSKLQAQKKKEEEKAREKEPSELFKVAVKQPKVPVGVDPKSILCEHFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDTREEEQGTMEDWDQEKLEKVVASKSNEYNNMNKPTDIVCKYFLEAVEKKQYGWFWVCPNGIKECHYRHALPPGYILKSQMKALLEEEAQKITIEEEIENQRAKVSTCTPMTTDLFMQWKKKKVDEREAGLAAQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器