Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003075`

染色体: Chr08 坐标: 30938105-30940915 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003075`
名称	SmilChr08G003075
描述	L-ascorbate peroxidase 2, cytosolic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	30938105 - 30940915 / `+`

ID 对照

NCBI Gene ID	`LOC130997661`
GeneID	`130997661`
locus_tag	`-`
NCBI Name	`LOC130997661`
原始查询	`LOC130997661`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	L-ascorbate peroxidase 2, cytosolic
产物	L-ascorbate peroxidase 2%2C cytosolic
Arabidopsis	`AT3G09640` (APX2) ascorbate peroxidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:820121] identity=79.5; qcov=1; evalue=9.73e-143; confidence=high
Rice	`Os07g0694700` (APX2) - identity=78.5; qcov=0.996; evalue=7.54e-140; confidence=high
GO	GO:0000302 (response to reactive oxygen species); GO:0004601 (peroxidase activity); GO:0020037 (heme binding); GO:0034599 (cellular response to oxidative stress); GO:0042744 (hydrogen peroxide catabolic process)
KEGG	smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00141 (peroxidase)
InterPro	-
eggNOG	-
NR	GeneID:130997661

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057779049.1`
2	Cytoplasm	细胞质	0.80000	`XP_057779049.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057779050.1`
4	Mitochondrion	线粒体	0.20000	`XP_057779051.1`
5	Nucleus	细胞核	0.00000	`XP_057779049.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:30938272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	D10,D2,D6
`Chr8:30938304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr8:30938314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:30938315`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr8:30938318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr8:30938326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:30939004`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	D10,D2,D6
`Chr8:30939087`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,A7,B135,C60
`Chr8:30939112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B71,C78
`Chr8:30939117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr8:30939122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:30939314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779049.1

268 aa

134

268

peroxidase

PF00141 peroxidase 25-256 aa

XP_057779050.1

257 aa

128

257

peroxidase

PF00141 peroxidase 25-255 aa

XP_057779051.1

238 aa

119

238

peroxidase

PF00141 peroxidase 25-226 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779049.1`	Pfam	`PF00141`	peroxidase	Domain	25	256	3.6e-40	139.0	Peroxidase
`XP_057779050.1`	Pfam	`PF00141`	peroxidase	Domain	25	255	6.3e-40	138.2	Peroxidase
`XP_057779051.1`	Pfam	`PF00141`	peroxidase	Domain	25	226	4.6e-43	148.4	Peroxidase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009093141.1
CGTTCAATGTCGCGCTCCCCCTACCTGCATATACACCTTCGATCACTCTCATCTTTCTTCACTTGAATTGCATTGCTAGCTATTCTTCAGCCATTTTTTTTGCTGTGGAGTTTCAGCGCATTTGTAGCAATGGTGAAGAAGTATCCGGCGATGAGCAAGGAGTACCAGGCGGCGCTGGAGAAATGCAAGAAGAAGCTCAGAGGTTTGATCGCCGAGAAGAACTGTGCTCCGATCATGCTGCGTTTGGCATGGCACTCAGC...

XR_009093142.1
CGTTCAATGTCGCGCTCCCCCTACCTGCATATACACCTTCGATCACTCTCATCTTTCTTCACTTGAATTGCATTGCTAGCTATTCTTCAGCCATTTTTTTTGCTGTGGAGTTTCAGCGCATTTGTAGCAATGGTGAAGAAGTATCCGGCGATGAGCAAGGAGTACCAGGCGGCGCTGGAGAAATGCAAGAAGAAGCTCAGAGGTTTGATCGCCGAGAAGAACTGTGCTCCGATCATGCTGCGTTTGGCATGGCACTCAGC...

CDS

3 records

下载 CDS FASTA

LOC130997661
ATGGTGAAGAAGTATCCGGCGATGAGCAAGGAGTACCAGGCGGCGCTGGAGAAATGCAAGAAGAAGCTCAGAGGTTTGATCGCCGAGAAGAACTGTGCTCCGATCATGCTGCGTTTGGCATGGCACTCAGCTGGAACATATGATTGGAAAACAAAAACAGGAGGGCCATTTGGGACAATCAGGAACCATGAAGAGCTTGCTCATGGAGCTAACAATGGCCTCGACATTGCTGTTAGGCTGCTGGAGCCAATCAAGGAACA...

Protein

3 records

下载 Protein FASTA

XP_057779049.1
MVKKYPAMSKEYQAALEKCKKKLRGLIAEKNCAPIMLRLAWHSAGTYDWKTKTGGPFGTIRNHEELAHGANNGLDIAVRLLEPIKEQFPILSYADFYQLAGVVAVEVTGGPKIPFHPRRPDKHESPPEGRLPDATKGTDHLREVFGHMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTSNPLIFDNFYFKYKLFILLIFELFASFYFIVIDELHRLAEYRELVSGEKQGLIQLPSDKALLEDPVFRSYIKKYAADEDAF...

XP_057779050.1
MVKKYPAMSKEYQAALEKCKKKLRGLIAEKNCAPIMLRLAWHSAGTYDWKTKTGGPFGTIRNHEELAHGANNGLDIAVRLLEPIKEQFPILSYADFYQLAGVVAVEVTGGPKIPFHPRRPDKHESPPEGRLPDATKGTDHLREVFGHMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTSNPLIFDNFYFKYKLFILLIFELFASFYFIVIDELHRLAEYRELVSGEKQGLIQLPSDKALLEDPVFRSYIKKYAAVR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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