Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003122`

染色体: Chr08 坐标: 31531828-31534116 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003122`
名称	SmilChr08G003122
描述	zinc finger protein JACKDAW-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	31531828 - 31534116 / `+`

ID 对照

NCBI Gene ID	`LOC130997711`
GeneID	`130997711`
locus_tag	`-`
NCBI Name	`LOC130997711`
原始查询	`LOC130997711`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein JACKDAW-like
产物	zinc finger protein JACKDAW-like
Arabidopsis	`AT5G03150` (JKD) C2H2-like zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:831919] identity=48.5; qcov=1.06; evalue=2.41e-124; confidence=high
Rice	`Os01g0242200` (OsIDD8) - identity=55.6; qcov=0.705; evalue=1.54e-109; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF00096 (zf-C2H2); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:130997711

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779108.1`
2	Chromosome	染色体	0.00000	`XP_057779108.1`
3	Centromere	着丝粒	0.00000	`XP_057779108.1`
4	Chromatin	染色质	0.00000	`XP_057779108.1`
5	Telomere	端粒	0.00000	`XP_057779108.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:31532887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr8:31532920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr8:31533329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B33,B49,C32,C68
`Chr8:31533395`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,C82
`Chr8:31533422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B15,C15
`Chr8:31533479`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B125,C21,C36,C6
`Chr8:31533523`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr8:31533713`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B21,B82,C26,C48,C52
`Chr8:31533909`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,C8
`Chr8:31533947`	`GT`	`G`	1bp_deletion	frameshift_variant	1	C60
`Chr8:31533947`	`GT`	`G`	1bp_deletion	CDS_variant	1	C60
`Chr8:31533967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B102,B11,B81

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779108.1

449 aa

224

449

zf-C2H2

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF00096 zf-C2H2 54-76 aa PF22996 C2H2-2nd_BIRD-IDD 92-126 aa PF22995 C2CH-3rd_BIRD-IDD 130-154 aa PF22992 C2CH-4th_BIRD-IDD 157-194 aa

XP_057779109.1

447 aa

224

447

zf-C2H2

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF00096 zf-C2H2 52-74 aa PF22996 C2H2-2nd_BIRD-IDD 90-124 aa PF22995 C2CH-3rd_BIRD-IDD 128-152 aa PF22992 C2CH-4th_BIRD-IDD 155-192 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779108.1`	Pfam	`PF00096`	zf-C2H2	Domain	54	76	1e-07	32.7	Zinc finger, C2H2 type
`XP_057779108.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	92	126	3.5e-20	72.5	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057779108.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	130	154	9.8e-15	54.7	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057779108.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	157	194	4.4e-24	84.8	BIRD-IDD transcription factor, fourth C2HC zinc finger
`XP_057779109.1`	Pfam	`PF00096`	zf-C2H2	Domain	52	74	9.8e-08	32.8	Zinc finger, C2H2 type
`XP_057779109.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	90	124	3.5e-20	72.5	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057779109.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	128	152	9.7e-15	54.7	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057779109.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	155	192	4.3e-24	84.8	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923125.1
TTGAGCTCGAAAAACTACGGATGACACACAGCTCTACACATTCTGGTTACAAGCAGCATACAGCCAATGCGTACGTACAAACAAGTGTATCTAGAGAGAGAGACACGCACACACACATTCACAAATATATAGGAGAGAGAGAGAGAGAACACACACACACAGAGGTGGCCCCAGCAGCTATTTCTATGGCTGACCGACTTTGAAATTAAGAGATAAAGAGATAGGACGTAGAAGGGGAAGCTTAATTGCCAGAGAGAGAG...

XM_057923126.1
CGAAAAACTACGGATGACACACAGCTCTACACATTCTGGTTACAAGCAGCATACAGCCAATGCGTACGTACAAACAAGTGTATCTAGAGAGAGAGACACGCACACACACATTCACAAATATATAGGAGAGAGAGAGAGAGAACACACACACACAGAGGTGGCCCCAGCAGCTATTTCTATGGCTGACCGACTTTGAAATTAAGAGATAAAGAGATAGGACGTAGAAGGGGAAGCTTAATTGCCAGAGAGAGAGAGAGAGA...

CDS

2 records

下载 CDS FASTA

LOC130997711
ATGATGTCTGGTGATGTGTTTTCTGTTCCCAATTCCCAAACAAACCCTAACTCCAAACCCCCCTCTTCTGCAAAAAAGCGAAGGAATCTTCCCGGCACACCAGATCCAGATGCAGAAGTCATCGCTCTTTCTCCAAAGACGCTTATGGCGACGAACCGATTCATCTGCGAAATCTGCAACAAAGGTTTCCAGCGAGACCAGAATCTGCAGCTGCACAGGAGAGGGCACAACCTTCCATGGAAGCTGAAGCAAAGATCTAA...

LOC130997711
ATGATGTCTGGTGATGTGTTTTCTGTTCCCAATTCCCAAACAAACCCTAACTCCAAACCCCCCTCTTCTGCAAAAAAGCGAAGGAATCTTCCCGGCACACCAGATGCAGAAGTCATCGCTCTTTCTCCAAAGACGCTTATGGCGACGAACCGATTCATCTGCGAAATCTGCAACAAAGGTTTCCAGCGAGACCAGAATCTGCAGCTGCACAGGAGAGGGCACAACCTTCCATGGAAGCTGAAGCAAAGATCTAACAAAGA...

Protein

2 records

下载 Protein FASTA

XP_057779108.1
MMSGDVFSVPNSQTNPNSKPPSSAKKRRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDQIKKKVYICPEKSCVHHEAARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEETSRVTTNNLSFRNDLGGNIINPHFRPDFAGNSIMGDHQQQKPRLSLWLDQANSQLNQIDHNSNMFMPNSSGLTDI...

XP_057779109.1
MMSGDVFSVPNSQTNPNSKPPSSAKKRRNLPGTPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDQIKKKVYICPEKSCVHHEAARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEETSRVTTNNLSFRNDLGGNIINPHFRPDFAGNSIMGDHQQQKPRLSLWLDQANSQLNQIDHNSNMFMPNSSGLTDIIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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