Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003894`

染色体: Chr01 坐标: 57235042-57237492 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003894`
名称	SmilChr01G003894
描述	calcium-dependent protein kinase 24-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	57235042 - 57237492 / `+`

ID 对照

NCBI Gene ID	`LOC130997712`
GeneID	`130997712`
locus_tag	`-`
NCBI Name	`LOC130997712`
原始查询	`LOC130997712`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-dependent protein kinase 24-like
产物	calcium-dependent protein kinase 24-like
Arabidopsis	`AT2G31500` (CPK24) calcium-dependent protein kinase 24 [Source:NCBI gene (formerly Entrezgene);Acc:817708] identity=66.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os07g0568600` (OsCDPK20) - identity=65.8; qcov=0.913; evalue=0; confidence=high
GO	GO:0004683 (calcium/calmodulin-dependent protein kinase activity); GO:0005509 (calcium ion binding); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0009931 (calcium-dependent protein serine/threonine kinase activity); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction); GO:0046777 (protein autophosphorylation)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:130997712

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057779112.1`
2	Cytosol	细胞质基质	0.80000	`XP_057779112.1`
3	Cytoplasm	细胞质	0.40000	`XP_057779112.1`
4	Nucleus	细胞核	0.00000	`XP_057779112.1`
5	Chromosome	染色体	0.00000	`XP_057779112.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:57235213`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,A6,C26,C50
`Chr1:57236939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B53,B61,C54,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779112.1

531 aa

266

531

Pkinase

PK_Tyr_Ser-Thr

EF-hand_7

EF-hand_5

EF-hand_1

EF-hand_6

EF-hand_8

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_5

EF-hand_1

EF-hand_6

EF-hand_5

PF00069 Pkinase 60-318 aa PF07714 PK_Tyr_Ser-Thr 62-313 aa PF13499 EF-hand_7 365-425 aa PF13202 EF-hand_5 366-388 aa PF00036 EF-hand_1 366-391 aa PF13405 EF-hand_6 366-392 aa PF13833 EF-hand_8 390-428 aa PF13202 EF-hand_5 405-425 aa PF13833 EF-hand_8 430-459 aa PF13499 EF-hand_7 436-500 aa PF13202 EF-hand_5 438-460 aa PF00036 EF-hand_1 438-462 aa PF13405 EF-hand_6 438-462 aa PF13202 EF-hand_5 477-499 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779112.1`	Pfam	`PF00069`	Pkinase	Domain	60	318	4.5e-79	266.3	Protein kinase domain
`XP_057779112.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	62	313	1.2e-26	94.3	Protein tyrosine and serine/threonine kinase
`XP_057779112.1`	Pfam	`PF13499`	EF-hand_7	Domain	365	425	1.7e-27	96.3	EF-hand domain pair
`XP_057779112.1`	Pfam	`PF13202`	EF-hand_5	Domain	366	388	3.5e-22	77.5	EF hand
`XP_057779112.1`	Pfam	`PF00036`	EF-hand_1	Domain	366	391	7.5e-29	97.8	EF hand domain
`XP_057779112.1`	Pfam	`PF13405`	EF-hand_6	Domain	366	392	2.5e-21	74.0	EF-hand domain
`XP_057779112.1`	Pfam	`PF13833`	EF-hand_8	Domain	390	428	4.5e-19	68.6	EF-hand domain pair
`XP_057779112.1`	Pfam	`PF13202`	EF-hand_5	Domain	405	425	3.5e-22	77.5	EF hand
`XP_057779112.1`	Pfam	`PF13833`	EF-hand_8	Domain	430	459	4.5e-19	68.6	EF-hand domain pair
`XP_057779112.1`	Pfam	`PF13499`	EF-hand_7	Domain	436	500	1.7e-27	96.3	EF-hand domain pair
`XP_057779112.1`	Pfam	`PF13202`	EF-hand_5	Domain	438	460	3.5e-22	77.5	EF hand
`XP_057779112.1`	Pfam	`PF00036`	EF-hand_1	Domain	438	462	7.5e-29	97.8	EF hand domain
`XP_057779112.1`	Pfam	`PF13405`	EF-hand_6	Domain	438	462	2.5e-21	74.0	EF-hand domain
`XP_057779112.1`	Pfam	`PF13202`	EF-hand_5	Domain	477	499	3.5e-22	77.5	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923129.1
CCGTCTCAGATTCCCCCTCCCATTTTTGTTCCCATGGGATTGTAAGCAAAAGCAAAAGTTCCTCTCAAGAAAGAAGAGGAAAAGAAATACCTGAAAATCATATAAAAAGAAGAAAAATCCCATGGGGCCATGCATGTCCATACCAAGAAGAAGCGTCCTCTTCAGGAGGCGGGATCAGAGGCACGGCCAGCAGAAGCTGAACGAAAAGGGCGGCGGCAAGGGCGGGCCGCGGCCCCTGCGGCTGTCGCGGCCCATCCAGG...

CDS

1 records

下载 CDS FASTA

LOC130997712
ATGGGGCCATGCATGTCCATACCAAGAAGAAGCGTCCTCTTCAGGAGGCGGGATCAGAGGCACGGCCAGCAGAAGCTGAACGAAAAGGGCGGCGGCAAGGGCGGGCCGCGGCCCCTGCGGCTGTCGCGGCCCATCCAGGTGCTGTGGGATCCGACGGGAAACGACATCTTCAACAAGTATAGGCTGGGGCGGGAGCTCGGGAGGGGCGAGTTCGGGGTGACGTACGAGTGCTTCAACGACGCGACGGAGGAGAAGTTTGC...

Protein

1 records

下载 Protein FASTA

XP_057779112.1
MGPCMSIPRRSVLFRRRDQRHGQQKLNEKGGGKGGPRPLRLSRPIQVLWDPTGNDIFNKYRLGRELGRGEFGVTYECFNDATEEKFACKKISKSKLRTDVDVEDVRREVEIMRHLPKHPNIVSYKEVYEDKEAIYLVMEVCGGGELFDRIVARGHYTERAAAQVTKTILEVVKVCHAHGVIHRDLKPENFLYANSCENSPLKAIDFGLSIFFEPGQRFTEIVGSPYYMAPEVLRRNYGAEVDIWSTGVILYILLCGVPPF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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