当前解析结果
SmilChr08G003125| 统一新 Gene ID | SmilChr08G003125 |
|---|---|
| 名称 | SmilChr08G003125 |
| 描述 | uncharacterized SmilChr08G003125 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 31588169 - 31595354 / + |
| NCBI Gene ID | LOC130997715 |
|---|---|
| GeneID | 130997715 |
| locus_tag | - |
| NCBI Name | LOC130997715 |
| 原始查询 | LOC130997715 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818292]; symbol=AT2G37160; hit=AT2G37160; species=arabidopsis; confidence=high |
| 产物 | Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818292]; symbol=AT2G37160; hit=AT2G37160; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G37160 (AT2G37160)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818292] identity=74.2; qcov=1; evalue=0; confidence=high |
| Rice | Os12g0172500 (OsWD40-195)- identity=67.4; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00400 (WD40) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997715 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057779113.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057779113.1 |
| 3 | Vesicle | 囊泡 | 0.60000 | XP_057779113.1 |
| 4 | Nucleus | 细胞核 | 0.40000 | XP_057779113.1 |
| 5 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057779113.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:31589481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B121,B79 |
Chr8:31589685 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:31589701 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B15,C15,C31 |
Chr8:31589949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr8:31589981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B59 |
Chr8:31591630 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr8:31592678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr8:31592861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,D11 |
Chr8:31594640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr8:31594715 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B23,B84,C60,D10 |
Chr8:31594898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779113.1PF00400
WD40 302-330 aa
PF00400
WD40 347-372 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779113.1 |
Pfam | PF00400 |
WD40 | Repeat | 302 | 330 | 6.5e-14 | 52.5 | WD domain, G-beta repeat |
XP_057779113.1 |
Pfam | PF00400 |
WD40 | Repeat | 347 | 372 | 6.5e-14 | 52.5 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。