Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003138`

染色体: Chr08 坐标: 31787721-31790218 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003138`
名称	SmilChr08G003138
描述	probable tocopherol O-methyltransferase, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	31787721 - 31790218 / `-`

ID 对照

NCBI Gene ID	`LOC130997728`
GeneID	`130997728`
locus_tag	`-`
NCBI Name	`LOC130997728`
原始查询	`LOC130997728`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable tocopherol O-methyltransferase, chloroplastic
产物	probable tocopherol O-methyltransferase%2C chloroplastic
Arabidopsis	`AT1G64970` (G-TMT) gamma-tocopherol methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:842805] identity=71.6; qcov=0.83; evalue=8.97e-157; confidence=high
Rice	`Os02g0701600` (OsVTE4) - identity=75.2; qcov=0.812; evalue=2.17e-165; confidence=high
GO	GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0032259 (methylation)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01209 (Ubie_methyltran); PF02353 (CMAS); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:130997728

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057779118.1`
2	Nucleus	细胞核	0.00000	`XP_057779118.1`
3	Chromosome	染色体	0.00000	`XP_057779118.1`
4	Centromere	着丝粒	0.00000	`XP_057779118.1`
5	Chromatin	染色质	0.00000	`XP_057779118.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:31787942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B76
`Chr8:31788638`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr8:31789518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:31789634`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C34
`Chr8:31789634`	`TC`	`T`	1bp_deletion	CDS_variant	1	C34
`Chr8:31789637`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:31789779`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779118.1

352 aa

176

352

Methyltransf_23

Ubie_methyltran

CMAS

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF13489 Methyltransf_23 116-241 aa PF01209 Ubie_methyltran 125-239 aa PF02353 CMAS 127-236 aa PF13847 Methyltransf_31 128-245 aa PF13649 Methyltransf_25 132-227 aa PF08242 Methyltransf_12 133-229 aa PF08241 Methyltransf_11 133-231 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779118.1`	Pfam	`PF13489`	Methyltransf_23	Domain	116	241	8.1e-14	52.4	Methyltransferase domain
`XP_057779118.1`	Pfam	`PF01209`	Ubie_methyltran	Family	125	239	7.3e-08	32.8	ubiE/COQ5 methyltransferase family
`XP_057779118.1`	Pfam	`PF02353`	CMAS	Family	127	236	2.6e-13	50.6	Mycolic acid cyclopropane synthetase
`XP_057779118.1`	Pfam	`PF13847`	Methyltransf_31	Domain	128	245	3.6e-17	63.2	Methyltransferase domain
`XP_057779118.1`	Pfam	`PF13649`	Methyltransf_25	Domain	132	227	8.6e-21	75.2	Methyltransferase domain
`XP_057779118.1`	Pfam	`PF08242`	Methyltransf_12	Domain	133	229	4.2e-12	47.4	Methyltransferase domain
`XP_057779118.1`	Pfam	`PF08241`	Methyltransf_11	Domain	133	231	1.7e-22	80.6	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923135.1
ATTACCTATTGGAATACTACATACCCATTTAAATTTCGTCACGCAAGTTATGAAAGCGTTGTATTTCAATTTCATAAACTTCTGTGAAAGCTTGAATTAAATCTGCATTTAAAACCTTACAAAATAAAACTATTATTCATTGGTGTAAAAACATAGTTGGAATATTTCTTTGTATCGAGATATTCACGGTCAAATACATGAGTGGCTCGTACCTTGAAAAATAAAAAAAAAATAAAAAAACTTTCTGTAATCGTGGACGA...

CDS

1 records

下载 CDS FASTA

LOC130997728
ATGTGGGTGGAAGGAATCTGCAGCAGCGGGTGGCGCAGCCACGGGGGCCACCTCGCCACGTCCGCTCCCACTAACCCAATAAAGCCAGCGCTAAGGACCATTGCCAAAAACGTGACTGTTTCCAAAACCCTCAGGACACGTCGGCACGCGATGAGCGCCAACGCCGCATCCGCATCGGCATCGGCGGAGAGCCTGCGGAAAGGGATCGCGGAGTTCTACGACGAGTCGTCGGGGGTGTGGGAGGACATATGGGGAGACCA...

Protein

1 records

下载 Protein FASTA

XP_057779118.1
MWVEGICSSGWRSHGGHLATSAPTNPIKPALRTIAKNVTVSKTLRTRRHAMSANAASASASAESLRKGIAEFYDESSGVWEDIWGDHMHHGFYEPASDVSISDHRAAQIRMIEESLAFASLSDESKQKPKNIVDVGCGIGGSSRYLARKYGANCQGITLSPVQAHRAQQLADAQGLKGKVSFEVADALNQPFPDGQFDLVWSMESGEHMPDKKKFVNELVRVAAPGGTIIIVTWCHRDLSPSEESLRPEEKNLLDRICRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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