Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003141`

染色体: Chr08 坐标: 31808412-31816865 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003141`
名称	SmilChr08G003141
描述	origin of replication complex subunit 3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	31808412 - 31816865 / `-`

ID 对照

NCBI Gene ID	`LOC130997730`
GeneID	`130997730`
locus_tag	`-`
NCBI Name	`LOC130997730`
原始查询	`LOC130997730`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	origin of replication complex subunit 3
产物	origin of replication complex subunit 3
Arabidopsis	`AT5G16690` (ORC3) origin recognition complex subunit 3 [Source:NCBI gene (formerly Entrezgene);Acc:831530] identity=42; qcov=1.04; evalue=0; confidence=medium
Rice	`Os10g0402200` (ORC3) - identity=40; qcov=1.03; evalue=9.36e-179; confidence=medium
GO	GO:0003688 (DNA replication origin binding); GO:0005656 (nuclear pre-replicative complex); GO:0005664 (nuclear origin of replication recognition complex); GO:0006260 (DNA replication); GO:0006270 (DNA replication initiation); GO:0031261 (DNA replication preinitiation complex)
KEGG	-
Pfam	PF07034 (ORC3_N); PF18137 (WHD_ORC)
InterPro	-
eggNOG	-
NR	GeneID:130997730

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779121.1`
2	Chromosome	染色体	0.80000	`XP_057779122.1`
3	Nucleus membrane	核膜	0.20000	`XP_057779121.1`
4	Centromere	着丝粒	0.00000	`XP_057779122.1`
5	Chromatin	染色质	0.00000	`XP_057779122.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:31809795`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	B3,C11,C12,C69
`Chr8:31809795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B3,C11,C12,C69
`Chr8:31810061`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B96,D4
`Chr8:31813283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:31814849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:31815703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr8:31816037`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B13,C8,D7
`Chr8:31816256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:31816449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B26,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779121.1

746 aa

373

746

ORC3_N

WHD_ORC

PF07034 ORC3_N 23-342 aa PF18137 WHD_ORC 589-679 aa

XP_057779122.1

718 aa

359

718

ORC3_N

WHD_ORC

PF07034 ORC3_N 23-342 aa PF18137 WHD_ORC 589-716 aa

XP_057779123.1

718 aa

359

718

ORC3_N

WHD_ORC

PF07034 ORC3_N 23-342 aa PF18137 WHD_ORC 589-716 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779121.1`	Pfam	`PF07034`	ORC3_N	Domain	23	342	1.1e-59	203.2	Origin recognition complex (ORC) subunit 3 N-terminus
`XP_057779121.1`	Pfam	`PF18137`	WHD_ORC	Domain	589	679	1.5e-14	55.0	Origin recognition complex winged helix C-terminal
`XP_057779122.1`	Pfam	`PF07034`	ORC3_N	Domain	23	342	1.1e-59	203.2	Origin recognition complex (ORC) subunit 3 N-terminus
`XP_057779122.1`	Pfam	`PF18137`	WHD_ORC	Domain	589	716	4.5e-26	92.3	Origin recognition complex winged helix C-terminal
`XP_057779123.1`	Pfam	`PF07034`	ORC3_N	Domain	23	342	1.1e-59	203.2	Origin recognition complex (ORC) subunit 3 N-terminus
`XP_057779123.1`	Pfam	`PF18137`	WHD_ORC	Domain	589	716	4.5e-26	92.3	Origin recognition complex winged helix C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057923138.1
GTGGTCTCAACCCGGCACTAACCCTTACCATTTCCCGCCAAAGAAAGGCGGTTTCCTAAACTGCATTACCTAAAAGCCGTCAACGAGTAGAGACACAAAGAAAGAAAAATCAGAATGGCGCCGGCAGCCGATCCAGCGACGTCGCCGTCGATTTCCACCGCAAATAGTGATCTCCAGCCTTTCTTCGTTCTCCACAAAGCCGCTACGCGGAAACCCGCCTCTAAAACCAGACGGAGAATCGATCTCTCCCCCAAAGTTTC...

XM_057923139.1
GTGGTCTCAACCCGGCACTAACCCTTACCATTTCCCGCCAAAGAAAGGCGGTTTCCTAAACTGCATTACCTAAAAGCCGTCAACGAGTAGAGACACAAAGAAAGAAAAATCAGAATGGCGCCGGCAGCCGATCCAGCGACGTCGCCGTCGATTTCCACCGCAAATAGTGATCTCCAGCCTTTCTTCGTTCTCCACAAAGCCGCTACGCGGAAACCCGCCTCTAAAACCAGACGGAGAATCGATCTCTCCCCCAAAGTTTC...

CDS

3 records

下载 CDS FASTA

LOC130997730
ATGGCGCCGGCAGCCGATCCAGCGACGTCGCCGTCGATTTCCACCGCAAATAGTGATCTCCAGCCTTTCTTCGTTCTCCACAAAGCCGCTACGCGGAAACCCGCCTCTAAAACCAGACGGAGAATCGATCTCTCCCCCAAAGTTTCCGATGGTTCTGCTGAAGAATACAATGACAACTCGCGATTTGAAACCTTCAAACTCCTGTGGTCCAACACTGAATCCATTATTAAGGATGTCTTGAAAAACCTTAACACTAGCGT...

Protein

3 records

下载 Protein FASTA

XP_057779121.1
MAPAADPATSPSISTANSDLQPFFVLHKAATRKPASKTRRRIDLSPKVSDGSAEEYNDNSRFETFKLLWSNTESIIKDVLKNLNTSVFDEINKWVHASFDSICACRTREFSRATSMYPIPNNVPIGAQIFTALLFTKNVEFVDDISTFADLGAHLRSNGCLVANLTSIDFCAKNGVGGCLKTLLRQFLLVGIDAPEMSILASWYTEQENHDKPLIVIIDDVERCSSSVLNDFIVMLREWVVKVPIILVLGVATSVDALRN...

XP_057779122.1
MAPAADPATSPSISTANSDLQPFFVLHKAATRKPASKTRRRIDLSPKVSDGSAEEYNDNSRFETFKLLWSNTESIIKDVLKNLNTSVFDEINKWVHASFDSICACRTREFSRATSMYPIPNNVPIGAQIFTALLFTKNVEFVDDISTFADLGAHLRSNGCLVANLTSIDFCAKNGVGGCLKTLLRQFLLVGIDAPEMSILASWYTEQENHDKPLIVIIDDVERCSSSVLNDFIVMLREWVVKVPIILVLGVATSVDALRN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器