当前解析结果
SmilChr08G003182| 统一新 Gene ID | SmilChr08G003182 |
|---|---|
| 名称 | SmilChr08G003182 |
| 描述 | putative white-brown complex homolog protein 30 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 32552656 - 32561997 / + |
| NCBI Gene ID | LOC130997761 |
|---|---|
| GeneID | 130997761 |
| locus_tag | - |
| NCBI Name | LOC130997761 |
| 原始查询 | LOC130997761 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative white-brown complex homolog protein 30 |
| 产物 | putative white-brown complex homolog protein 30 |
| Arabidopsis | AT2G37010 (NAP12)non-intrinsic ABC protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:818275] identity=62.4; qcov=0.98; evalue=0; confidence=high |
| Rice | Os11g0416900 (OsABCG28)- identity=59.6; qcov=0.968; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane); PF19055 (ABC2_membrane_7) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997761 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779168.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057779168.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057779168.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057779168.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779168.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:32553057 |
G |
GC |
1bp_insertion | frameshift_variant | 7 | A1,B121,B134,B14,B72,C15,C57 |
Chr8:32553061 |
GA |
G |
1bp_deletion | frameshift_variant | 16 | A14,A4,A5,B105,B124,B136,B49,B7,B9,B91,C47,C52,C54,C7,C78,C79 |
Chr8:32553081 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A5,B124,B9,C54 |
Chr8:32553087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B140,B61,B77,B91 |
Chr8:32553101 |
T |
TA |
1bp_insertion | frameshift_variant | 7 | B49,B58,C26,C27,C4,C7,C78 |
Chr8:32553881 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | D10 |
Chr8:32553881 |
TA |
T |
1bp_deletion | CDS_variant | 1 | D10 |
Chr8:32553948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,D11 |
Chr8:32555035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr8:32556572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A24,B15,C15 |
Chr8:32557154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,C49,C60 |
Chr8:32557267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B133,B53 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779168.1PF00005
ABC_tran 503-653 aa
PF19055
ABC2_membrane_7 682-1077 aa
PF01061
ABC2_membrane 828-991 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779168.1 |
Pfam | PF00005 |
ABC_tran | Domain | 503 | 653 | 1.1e-23 | 85.1 | ABC transporter |
XP_057779168.1 |
Pfam | PF19055 |
ABC2_membrane_7 | Family | 682 | 1077 | 6.9e-193 | 641.8 | ABC-2 type transporter |
XP_057779168.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 828 | 991 | 2.9e-09 | 37.5 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。