当前解析结果
SmilChr08G003205| 统一新 Gene ID | SmilChr08G003205 |
|---|---|
| 名称 | SmilChr08G003205 |
| 描述 | uncharacterized SmilChr08G003205 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 32875069 - 32881265 / - |
| NCBI Gene ID | LOC130997783 |
|---|---|
| GeneID | 130997783 |
| locus_tag | - |
| NCBI Name | LOC130997783 |
| 原始查询 | LOC130997783 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| 产物 | Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969]; symbol=AT5G18510; hit=AT5G18510; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G18510 (AT5G18510)Aminotransferase-like, plant mobile domain family protein [Source:NCBI gene (formerly Entrezgene);Acc:831969] identity=20.6; qcov=0.498; evalue=3.13e-09; confidence=weak |
| Rice | Os03g0565300- identity=23.6; qcov=0.295; evalue=1.13e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | PF10536 (PMD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997783 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779190.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779190.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779190.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779190.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779190.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:32877309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,C51 |
Chr8:32877395 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr8:32877405 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B90 |
Chr8:32877419 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B113,C25 |
Chr8:32877482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,B93,C55 |
Chr8:32877570 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B131,C23,C72 |
Chr8:32877585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B22,C77 |
Chr8:32877590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr8:32877628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,C12 |
Chr8:32877703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B5,C73 |
Chr8:32877749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,C33 |
Chr8:32877767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B127 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779190.1PF10536
PMD 309-552 aa
XP_057779191.1PF10536
PMD 309-552 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779190.1 |
Pfam | PF10536 |
PMD | Domain | 309 | 552 | 1.5e-26 | 94.1 | Plant mobile domain |
XP_057779191.1 |
Pfam | PF10536 |
PMD | Domain | 309 | 552 | 1.5e-26 | 94.1 | Plant mobile domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。