当前解析结果
SmilChr08G003210| 统一新 Gene ID | SmilChr08G003210 |
|---|---|
| 名称 | SmilChr08G003210 |
| 描述 | phosphoglycerate kinase, cytosolic-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 32925653 - 32934213 / - |
| NCBI Gene ID | LOC130997788 |
|---|---|
| GeneID | 130997788 |
| locus_tag | - |
| NCBI Name | LOC130997788 |
| 原始查询 | LOC130997788 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphoglycerate kinase, cytosolic-like |
| 产物 | phosphoglycerate kinase%2C cytosolic-like |
| Arabidopsis | AT1G56190 (AT1G56190)Phosphoglycerate kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:842072] identity=33; qcov=0.738; evalue=3.27e-50; confidence=low |
| Rice | Os10g0442100- identity=44.2; qcov=0.848; evalue=5.37e-131; confidence=medium |
| GO | GO:0004618 (phosphoglycerate kinase activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006094 (gluconeogenesis); GO:0006096 (glycolytic process); GO:0006400 (tRNA modification); GO:0008176 (tRNA (guanine(46)-N7)-methyltransferase activity); GO:0043531 (ADP binding) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00162 (PGK); PF02390 (Methyltransf_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997788 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057779196.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057779200.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057779200.1 |
| 4 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057779196.1 |
| 5 | Nucleus | 细胞核 | 0.20000 | XP_057779200.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:32930290 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B9,C71 |
Chr8:32930459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,C8,D7 |
Chr8:32930693 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B16,B9,C71,C8 |
Chr8:32931219 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,B54,C9 |
Chr8:32931279 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | A24,B101,B68 |
Chr8:32931279 |
AT |
A |
1bp_deletion | CDS_variant | 3 | A24,B101,B68 |
Chr8:32932452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:32932854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr8:32933982 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,C39,C4 |
Chr8:32934047 |
AT |
A |
1bp_deletion | frameshift_variant | 74 | A10,A11,A14,A22,A3,A4,A5,A6,A9,B101,B103,B105,B109,B112,B118,B131,B134,B2,B20,B22,B27,B29,B3,B31,B33,B35,B4,B41,B45,B49,B5,B51,B52,B54,B6,B60,B61,B64,B66,B71,B78,B8,B84,B88,B89,B90,B92,C16,C20,C21,C23,C27,C3,C32,C33,C35,C37,C40,C44,C46,C5,C52,C55,C56,C61,C64,C66,C68,C70,C79,C82,C86,C9,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779196.1PF00162
PGK 99-440 aa
PF02390
Methyltransf_4 499-629 aa
XP_057779197.1PF00162
PGK 99-440 aa
PF02390
Methyltransf_4 499-629 aa
XP_057779198.1PF00162
PGK 99-400 aa
PF02390
Methyltransf_4 417-547 aa
XP_057779199.1PF00162
PGK 99-400 aa
PF02390
Methyltransf_4 417-547 aa
XP_057779200.1PF00162
PGK 21-336 aa
PF02390
Methyltransf_4 395-525 aa
XP_057779201.1PF00162
PGK 99-440 aa
PF02390
Methyltransf_4 499-554 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779196.1 |
Pfam | PF00162 |
PGK | Domain | 99 | 440 | 1.5e-60 | 205.9 | Phosphoglycerate kinase |
XP_057779196.1 |
Pfam | PF02390 |
Methyltransf_4 | Family | 499 | 629 | 3.1e-23 | 82.8 | Putative methyltransferase |
XP_057779197.1 |
Pfam | PF00162 |
PGK | Domain | 99 | 440 | 1.5e-60 | 205.9 | Phosphoglycerate kinase |
XP_057779197.1 |
Pfam | PF02390 |
Methyltransf_4 | Family | 499 | 629 | 3.1e-23 | 82.8 | Putative methyltransferase |
XP_057779198.1 |
Pfam | PF00162 |
PGK | Domain | 99 | 400 | 5.9e-54 | 184.2 | Phosphoglycerate kinase |
XP_057779198.1 |
Pfam | PF02390 |
Methyltransf_4 | Family | 417 | 547 | 2.4e-23 | 83.2 | Putative methyltransferase |
XP_057779199.1 |
Pfam | PF00162 |
PGK | Domain | 99 | 400 | 5.9e-54 | 184.2 | Phosphoglycerate kinase |
XP_057779199.1 |
Pfam | PF02390 |
Methyltransf_4 | Family | 417 | 547 | 2.4e-23 | 83.2 | Putative methyltransferase |
XP_057779200.1 |
Pfam | PF00162 |
PGK | Domain | 21 | 336 | 7.9e-59 | 200.3 | Phosphoglycerate kinase |
XP_057779200.1 |
Pfam | PF02390 |
Methyltransf_4 | Family | 395 | 525 | 2.3e-23 | 83.2 | Putative methyltransferase |
XP_057779201.1 |
Pfam | PF00162 |
PGK | Domain | 99 | 440 | 9.3e-61 | 206.6 | Phosphoglycerate kinase |
XP_057779201.1 |
Pfam | PF02390 |
Methyltransf_4 | Family | 499 | 554 | 2.1e-08 | 34.5 | Putative methyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。