Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003273`

染色体: Chr08 坐标: 33785806-33788827 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003273`
名称	SmilChr08G003273
描述	E3 ubiquitin-protein ligase RZFP34-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	33785806 - 33788827 / `-`

ID 对照

NCBI Gene ID	`LOC130997840`
GeneID	`130997840`
locus_tag	`-`
NCBI Name	`LOC130997840`
原始查询	`LOC130997840`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	E3 ubiquitin-protein ligase RZFP34-like
产物	E3 ubiquitin-protein ligase RZFP34-like
Arabidopsis	`AT5G22920` (AT5G22920) CHY-type/CTCHY-type/RING-type Zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:832356] identity=62.1; qcov=1.01; evalue=2.09e-138; confidence=high
Rice	`Os10g0456800` (DCA1) - identity=64.7; qcov=0.93; evalue=1.73e-138; confidence=high
GO	GO:0005634 (nucleus); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00097 (zf-C3HC4); PF05495 (zf-CHY); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF14599 (zinc_ribbon_6)
InterPro	-
eggNOG	-
NR	GeneID:130997840

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779253.1`
2	Cytoplasm	细胞质	1.00000	`XP_057779253.1`
3	Chromosome	染色体	0.00000	`XP_057779253.1`
4	Centromere	着丝粒	0.00000	`XP_057779253.1`
5	Chromatin	染色质	0.00000	`XP_057779253.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:33786130`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B55,C39
`Chr8:33786685`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr8:33787013`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr8:33787529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:33788175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779253.1

286 aa

143

286

zf-CHY

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 30-104 aa PF13639 zf-RING_2 165-208 aa PF13445 zf-RING_UBOX 166-206 aa PF00097 zf-C3HC4 166-208 aa PF14599 zinc_ribbon_6 213-271 aa

XP_057779254.1

286 aa

143

286

zf-CHY

zf-RING_2

zf-RING_UBOX

zf-C3HC4

zinc_ribbon_6

PF05495 zf-CHY 30-104 aa PF13639 zf-RING_2 165-208 aa PF13445 zf-RING_UBOX 166-206 aa PF00097 zf-C3HC4 166-208 aa PF14599 zinc_ribbon_6 213-271 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779253.1`	Pfam	`PF05495`	zf-CHY	Domain	30	104	1.2e-18	68.0	CHY zinc finger
`XP_057779253.1`	Pfam	`PF13639`	zf-RING_2	Domain	165	208	3.1e-08	34.4	Ring finger domain
`XP_057779253.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	166	206	1.5e-08	35.2	RING-type zinc-finger
`XP_057779253.1`	Pfam	`PF00097`	zf-C3HC4	Domain	166	208	2.4e-06	28.0	Zinc finger, C3HC4 type (RING finger)
`XP_057779253.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	213	271	1.5e-27	96.0	Zinc-ribbon
`XP_057779254.1`	Pfam	`PF05495`	zf-CHY	Domain	30	104	1.2e-18	68.0	CHY zinc finger
`XP_057779254.1`	Pfam	`PF13639`	zf-RING_2	Domain	165	208	3.1e-08	34.4	Ring finger domain
`XP_057779254.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	166	206	1.5e-08	35.2	RING-type zinc-finger
`XP_057779254.1`	Pfam	`PF00097`	zf-C3HC4	Domain	166	208	2.4e-06	28.0	Zinc finger, C3HC4 type (RING finger)
`XP_057779254.1`	Pfam	`PF14599`	zinc_ribbon_6	Domain	213	271	1.5e-27	96.0	Zinc-ribbon

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923271.1
GAACGTGTATAGATTGGATTTGAGAAAAGAAAAGATCAAAAGAGCAGTCACGAGAAACATCAAACATTATGGTATATTCACATTGTGTGAGGACCATTGAAGAAAAGCTGTTACAATCTGGTCCTAAAATCTAATCCAAATACACGCGCGCGCATACGCGTAATGTCTCCATGTTGGCTGTTACCAAACCCCTCCAACTATATTAACGTCTCCCAATTTCCAATCCTCTACCATCACTCCCACCACCACTTGCACCACGT...

XM_057923270.1
ATGGTATATTCACATTGTGTGAGGACCATTGAAGAAAAGCTGTTACAATCTGGTCCTAAAATCTAATCCAAATACACGCGCGCGCATACGCGTAATGTCTCCATGTTGGCTGTTACCAAACCCCTCCAACTATATTAACGTCTCCCAATTTCCAATCCTCTACCATCACTCCCACCACCACTTGCACCACGTCGTCTTTAATTTCTAAAGAATTTGGGATTTATTTTACCTAGAGTGAATTTTAAGGAAGGTTTTTGGTT...

CDS

2 records

下载 CDS FASTA

LOC130997840
ATGGACTGTGCTTTTGAACACCAGATCTTTTCTGAACTGCCTGCAATTGACGAATGCGTGATTAAGCAGGACTCTCAGGAATATGGGTGCTCTCATTACCAGAGGAAGTGTAAGATCGTAGCGCCCTGTTGCAACGAGACATTTGATTGCAGGCACTGCCACAATGATGCCAAGAACTCTATAGAAGTTGATCCACTCGATCGCCATGATATTCCACGTCATGAAGTAAAGAGGATCATCTGCTCAGTGTGTGACACAGA...

Protein

2 records

下载 Protein FASTA

XP_057779253.1
MDCAFEHQIFSELPAIDECVIKQDSQEYGCSHYQRKCKIVAPCCNETFDCRHCHNDAKNSIEVDPLDRHDIPRHEVKRIICSVCDTEQDVQQICTNCGVCMGKYYCSICKYFDDDISKNQYHCEKCGICRTGGKDNFFHCDKCECCYSNILKDSHICIERAMHHNCPICFEYLFDTPRDTTVLPCGHTIHLDCVKEMERHFQYSCPVCSKSYCDMTRVWEKLDQEIASTPMPQMYQNKMVWILCNDCGETSEVNFHILAH...

XP_057779254.1
MDCAFEHQIFSELPAIDECVIKQDSQEYGCSHYQRKCKIVAPCCNETFDCRHCHNDAKNSIEVDPLDRHDIPRHEVKRIICSVCDTEQDVQQICTNCGVCMGKYYCSICKYFDDDISKNQYHCEKCGICRTGGKDNFFHCDKCECCYSNILKDSHICIERAMHHNCPICFEYLFDTPRDTTVLPCGHTIHLDCVKEMERHFQYSCPVCSKSYCDMTRVWEKLDQEIASTPMPQMYQNKMVWILCNDCGETSEVNFHILAH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器