当前解析结果
SmilChr01G003906| 统一新 Gene ID | SmilChr01G003906 |
|---|---|
| 名称 | SmilChr01G003906 |
| 描述 | probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57351313 - 57354688 / + |
| NCBI Gene ID | LOC130997854 |
|---|---|
| GeneID | 130997854 |
| locus_tag | - |
| NCBI Name | LOC130997854 |
| 原始查询 | LOC130997854 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 |
| 产物 | probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 |
| Arabidopsis | AT3G28040 (AT3G28040)Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822428] identity=58.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0957100- identity=59.1; qcov=0.923; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997854 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779268.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779268.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779268.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779268.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779268.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57351577 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C26,C50 |
Chr1:57351751 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B56,B76,B96,C56 |
Chr1:57351818 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B41 |
Chr1:57351818 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr1:57351838 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C69 |
Chr1:57351839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr1:57351860 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B41,B85,C69,C78 |
Chr1:57351864 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B41,B85,C69,C78 |
Chr1:57352300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A3,C20,C80 |
Chr1:57352426 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr1:57353308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:57353356 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779268.1PF08263
LRRNT_2 28-68 aa
PF00560
LRR_1 97-116 aa
PF00560
LRR_1 121-141 aa
PF00560
LRR_1 167-189 aa
PF00560
LRR_1 192-213 aa
PF00560
LRR_1 215-233 aa
PF00560
LRR_1 239-260 aa
PF13855
LRR_8 239-296 aa
PF00560
LRR_1 263-285 aa
PF13855
LRR_8 287-346 aa
PF00560
LRR_1 288-308 aa
PF00560
LRR_1 311-333 aa
PF00560
LRR_1 335-357 aa
PF23598
LRR_14 400-549 aa
PF00560
LRR_1 407-427 aa
PF13516
LRR_6 430-443 aa
PF00560
LRR_1 431-452 aa
PF00560
LRR_1 455-475 aa
PF00069
Pkinase 713-981 aa
PF07714
PK_Tyr_Ser-Thr 714-982 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779268.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 68 | 5e-12 | 46.6 | Leucine rich repeat N-terminal domain |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 116 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 141 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 189 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 192 | 213 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 215 | 233 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 239 | 260 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 239 | 296 | 1.1e-45 | 153.9 | Leucine rich repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 263 | 285 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 287 | 346 | 1.1e-45 | 153.9 | Leucine rich repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 288 | 308 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 311 | 333 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 335 | 357 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 400 | 549 | 2.8e-28 | 99.4 | Leucine-rich repeat region |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 407 | 427 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 430 | 443 | 1.7e-08 | 34.6 | Leucine Rich repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 431 | 452 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 455 | 475 | 2.9e-54 | 169.9 | Leucine Rich Repeat |
XP_057779268.1 |
Pfam | PF00069 |
Pkinase | Domain | 713 | 981 | 1.6e-37 | 130.0 | Protein kinase domain |
XP_057779268.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 714 | 982 | 2.2e-38 | 132.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。