Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；公开文献名称仅收录身份已有序列证据的记录。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003301`

染色体: Chr08 坐标: 34161996-34171576 链方向: - 类型: protein_coding

基本信息

统一基因 ID	`SmilChr08G003301`
名称	SmilChr08G003301
描述	uncharacterized SmilChr08G003301
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	34161996 - 34171576 / `-`

ID 对照

NCBI Gene ID	`LOC130997863`
GeneID	`130997863`
locus_tag	`-`
NCBI 名称	`LOC130997863`
原始查询	`LOC130997863`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818244]; symbol=AT2G36720; hit=AT2G36720; species=arabidopsis; confidence=high
产物	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818244]; symbol=AT2G36720; hit=AT2G36720; species=arabidopsis; confidence=high
拟南芥	`AT2G36720` (AT2G36720) Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818244] identity=51.43; qcov=0.785; evalue=0.0; confidence=high
水稻	`Os06g0101000` (B1460A05.22) - identity=49.8; qcov=0.499; evalue=3.05e-150; confidence=medium
GO	-
KEGG	-
Pfam	PF00628 (PHD); PF16135 (TDBD); PF23011 (PHD-1st_NSD); PF23209 (IDM1_C)
InterPro	-
eggNOG	-
NR	GeneID:130997863

打开注释模块

亚细胞定位候选（最多五项）

预测得分表示模型支持程度，不能作为定位概率；所有候选均需实验验证。

方法与数据说明

当前结果已使用全部46,325条核基因组蛋白的完整原生特征重算。逐条核验39×39×7 PROFEAT、1280维ESM2、整条序列及五组模型的定位判定；当前模型、阈值文件和执行种子有记录。历史缓存及历史执行版本仍未确认。结果为计算候选，预测得分表示模型支持程度，不是校准概率，也不代表实验确认或已建立的预测准确率。模型含部分动物相关标签，应谨慎解读其在植物中的适用性。四舍五入后概率与阈值相等的481条记录已按未舍入模型值再次复核，原始投票全部一致。

排序	定位位置	预测得分	蛋白 ID
1	细胞核	1.00000	`SmilChr08G003301.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	参考等位基因	变异等位基因	类型	影响	携带材料数	材料
`Chr8:34162710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,C14
`Chr8:34163743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A7,C25
`Chr8:34164362`	`A`	`AAT`	2bp_insertion	frameshift_variant	68	A10,A13,A14,A2,A20,A22,A23,A7,B1,B100,B106,B108,B11,B114,B120,B121,B124,B127,B128,B13,B132,B135,B137,B138,B16,B18,B21,B22,B28,B29,B35,B40,B42,B43,B49,B52,B54,B58,B59,B62,B65,B7,B73,B83,B89,C11,C15,C23,C33,C37,C38,C45,C46,C47,C48,C50,C52,C55,C59,C65,C69,C74,C77,C78,C80,C85,C86,C87
`Chr8:34164400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr8:34164467`	`GT`	`G`	1bp_deletion	frameshift_variant	68	A1,A10,A13,A14,A16,A2,A20,A22,A23,A7,B1,B100,B106,B108,B11,B120,B121,B124,B127,B128,B13,B132,B135,B137,B138,B16,B18,B21,B22,B28,B35,B40,B42,B43,B45,B49,B52,B58,B59,B62,B65,B7,B73,B83,B89,C11,C15,C23,C33,C37,C38,C45,C46,C47,C48,C50,C52,C55,C59,C65,C69,C74,C77,C78,C80,C85,C86,C87
`Chr8:34164513`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr8:34164677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B41,B62,C31,C41,C75
`Chr8:34164996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B35,C12,C22,C4
`Chr8:34165125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr8:34165141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B139,B44,B73,B85,C24
`Chr8:34167048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:34167267`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B38,B39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

SmilChr08G003301.1

来源蛋白: XP_057779273.1

978 aa

489

978

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 237-298 aa PF16135 TDBD 542-585 aa PF23011 PHD-1st_NSD 602-645 aa PF00628 PHD 605-644 aa PF23209 IDM1_C 819-958 aa

SmilChr08G003301.2

来源蛋白: XP_057779274.1

977 aa

488

977

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 237-298 aa PF16135 TDBD 541-584 aa PF23011 PHD-1st_NSD 601-644 aa PF00628 PHD 604-643 aa PF23209 IDM1_C 818-957 aa

SmilChr08G003301.3

来源蛋白: XP_057779275.1

972 aa

486

972

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 237-292 aa PF16135 TDBD 536-579 aa PF23011 PHD-1st_NSD 596-639 aa PF00628 PHD 599-638 aa PF23209 IDM1_C 813-952 aa

SmilChr08G003301.4

来源蛋白: XP_057779276.1

971 aa

486

971

TDBD

PHD-1st_NSD

PHD

IDM1_C

PF16135 TDBD 237-292 aa PF16135 TDBD 535-578 aa PF23011 PHD-1st_NSD 595-638 aa PF00628 PHD 598-637 aa PF23209 IDM1_C 812-951 aa

蛋白 ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	得分	说明
`SmilChr08G003301.1` XP_057779273.1	Pfam	`PF16135`	TDBD	Domain	237	298	2.4e-26	92.2	Tify domain binding domain
`SmilChr08G003301.1` XP_057779273.1	Pfam	`PF16135`	TDBD	Domain	542	585	2.4e-26	92.2	Tify domain binding domain
`SmilChr08G003301.1` XP_057779273.1	Pfam	`PF23011`	PHD-1st_NSD	Domain	602	645	1.5e-08	35.4	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`SmilChr08G003301.1` XP_057779273.1	Pfam	`PF00628`	PHD	Domain	605	644	9.8e-09	35.8	PHD-finger
`SmilChr08G003301.1` XP_057779273.1	Pfam	`PF23209`	IDM1_C	Domain	819	958	8.1e-50	169.3	Increased DNA methylation 1, C-terminal domain
`SmilChr08G003301.2` XP_057779274.1	Pfam	`PF16135`	TDBD	Domain	237	298	2.6e-26	92.1	Tify domain binding domain
`SmilChr08G003301.2` XP_057779274.1	Pfam	`PF16135`	TDBD	Domain	541	584	2.6e-26	92.1	Tify domain binding domain
`SmilChr08G003301.2` XP_057779274.1	Pfam	`PF23011`	PHD-1st_NSD	Domain	601	644	1.5e-08	35.4	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`SmilChr08G003301.2` XP_057779274.1	Pfam	`PF00628`	PHD	Domain	604	643	9.8e-09	35.8	PHD-finger
`SmilChr08G003301.2` XP_057779274.1	Pfam	`PF23209`	IDM1_C	Domain	818	957	8.1e-50	169.3	Increased DNA methylation 1, C-terminal domain
`SmilChr08G003301.3` XP_057779275.1	Pfam	`PF16135`	TDBD	Domain	237	292	5e-27	94.4	Tify domain binding domain
`SmilChr08G003301.3` XP_057779275.1	Pfam	`PF16135`	TDBD	Domain	536	579	5e-27	94.4	Tify domain binding domain
`SmilChr08G003301.3` XP_057779275.1	Pfam	`PF23011`	PHD-1st_NSD	Domain	596	639	1.5e-08	35.4	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`SmilChr08G003301.3` XP_057779275.1	Pfam	`PF00628`	PHD	Domain	599	638	2.8e-10	40.8	PHD-finger
`SmilChr08G003301.3` XP_057779275.1	Pfam	`PF23209`	IDM1_C	Domain	813	952	8.1e-50	169.3	Increased DNA methylation 1, C-terminal domain
`SmilChr08G003301.4` XP_057779276.1	Pfam	`PF16135`	TDBD	Domain	237	292	5.4e-27	94.3	Tify domain binding domain
`SmilChr08G003301.4` XP_057779276.1	Pfam	`PF16135`	TDBD	Domain	535	578	5.4e-27	94.3	Tify domain binding domain
`SmilChr08G003301.4` XP_057779276.1	Pfam	`PF23011`	PHD-1st_NSD	Domain	595	638	1.5e-08	35.4	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
`SmilChr08G003301.4` XP_057779276.1	Pfam	`PF00628`	PHD	Domain	598	637	2.8e-10	40.8	PHD-finger
`SmilChr08G003301.4` XP_057779276.1	Pfam	`PF23209`	IDM1_C	Domain	812	951	8e-50	169.3	Increased DNA methylation 1, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。蛋白及对应 CDS 使用“基因 ID.序号”；序号在当前参考发布内固定，来源 accession 同时保留。

cDNA

6 records

下载 cDNA FASTA

XR_009093234.1
CACCCGAAATAATTAATTTTTTTAATATCTATTTTCCAACCAAAAAGATTCTCTCACAATCTTATTTCACTGCAAATTTTCTTCTCCCCTCTCACACTTCATAGGGTTTCTCTCTCTAGTATCCTTTCACATCCCACAGAAAACAAATTCCAGATATAACCCTCTTTCTTTTCTTCTATGCATGCAACTGAATTATCTAACTCGCGCAGATCCATAATCAGAATTGAGTTTCCTCCTCCTCCTCCGTCCGCTTCTGCAGT...

XR_009093233.1
AAAAAGATTCTCTCACAATCTTATTTCACTGCAAATTTTCTTCTCCCCTCTCACACTTCATAGGGTTTCTCTCTCTAGTATCCTTTCACATCCCACAGAAAACAAATTCCAGATATAACCCTCTTTCTTTTCTTCTATGCATGCAACTGAATTATCTAACTCGCGCAGATCCATAATCAGAATTGAGTTTCCTCCTCCTCCTCCGTCCGCTTCTGCAGTGTTCGCGAGCGGAGAATCAGCAAATTCTAAGAATTCGAGGA...

CDS

4 records

下载 CDS FASTA

SmilChr08G003301.4 (XP_057779276.1)
ATGAAGCCCGAACTGGGTTTGGATATCAAGTATCCGAGTGAATTGATTAAGACTGAACCAGGATTCGGGTCAGGAGATCCGAACCGACCCGAATCGAACGGTTCGGGTTGGATGGATCACTGCTATGTGCGCAGGGTGAGGCCGAGTGAGGCGAATGGTTTCGCGGTGTATACGAGGAATAAGAGGTTGAAGAGTACAAGTGTGGATAGAACTGCTTGTGCGGCTAAAATTGAGGGAGATTCTGCAGTATCAGTTAAATT...

SmilChr08G003301.3 (XP_057779275.1)
ATGAAGCCCGAACTGGGTTTGGATATCAAGTATCCGAGTGAATTGATTAAGACTGAACCAGGATTCGGGTCAGGAGATCCGAACCGACCCGAATCGAACGGTTCGGGTTGGATGGATCACTGCTATGTGCGCAGGGTGAGGCCGAGTGAGGCGAATGGTTTCGCGGTGTATACGAGGAATAAGAGGTTGAAGAGTACAAGTGTGGATAGAACTGCTTGTGCGGCTAAAATTGAGGGAGATTCTGCAGTATCAGTTAAATT...

Protein

4 records

下载 Protein FASTA

SmilChr08G003301.1 (XP_057779273.1)
MKPELGLDIKYPSELIKTEPGFGSGDPNRPESNGSGWMDHCYVRRVRPSEANGFAVYTRNKRLKSTSVDRTACAAKIEGDSAVSVKFEDGMSLKDEFVVNGGHALNVDKAGVNLGFLGGESEEEMMEIEVKEEPIPLAAVRTDGRRRFTRSVLVDSELENGDSGNLRDTVILEADGLVSEELALLGSTKTRKLEMKMSKKILIKGRPTTVRELFETGLLEGYPVFYNGGKRGFPLRGTIKDAGILCSCSFCKGVRVGANL...

SmilChr08G003301.2 (XP_057779274.1)
MKPELGLDIKYPSELIKTEPGFGSGDPNRPESNGSGWMDHCYVRRVRPSEANGFAVYTRNKRLKSTSVDRTACAAKIEGDSAVSVKFEDGMSLKDEFVVNGGHALNVDKAGVNLGFLGGESEEEMMEIEVKEEPIPLAAVRTDGRRRFTRSVLVDSELENGDSGNLRDTVILEADGLVSEELALLGSTKTRKLEMKMSKKILIKGRPTTVRELFETGLLEGYPVFYNGGKRGFPLRGTIKDAGILCSCSFCKGVRVGANL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器