Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003337`

染色体: Chr08 坐标: 34669738-34672777 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003337`
名称	SmilChr08G003337
描述	pentatricopeptide repeat-containing protein At5g03800
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	34669738 - 34672777 / `+`

ID 对照

NCBI Gene ID	`LOC130997895`
GeneID	`130997895`
locus_tag	`-`
NCBI Name	`LOC130997895`
原始查询	`LOC130997895`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At5g03800
产物	pentatricopeptide repeat-containing protein At5g03800
Arabidopsis	`AT5G03800` (EMB175) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831717] identity=52; qcov=0.911; evalue=0; confidence=high
Rice	`Os07g0172600` - identity=44.5; qcov=0.95; evalue=0; confidence=medium
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:130997895

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057779308.1`
2	Chloroplast	叶绿体	0.40000	`XP_057779308.1`
3	Nucleus	细胞核	0.00000	`XP_057779308.1`
4	Chromosome	染色体	0.00000	`XP_057779308.1`
5	Centromere	着丝粒	0.00000	`XP_057779308.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:34669950`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr8:34670050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B29,B97,C52,C65
`Chr8:34670099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:34670175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr8:34670490`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr8:34670865`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr8:34671530`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B97,D4
`Chr8:34671562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C47
`Chr8:34671703`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B78
`Chr8:34671831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,C20
`Chr8:34672116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B78
`Chr8:34672420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B122

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779308.1

898 aa

449

898

PPR_1

PPR_3

PPR_2

PPR

PPR_2

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR

E_motif

Eplus_motif

DYW_deaminase

PF12854 PPR_1 144-174 aa PF13812 PPR_3 144-192 aa PF13041 PPR_2 145-193 aa PF01535 PPR 148-178 aa PF01535 PPR 221-248 aa PF01535 PPR 250-275 aa PF01535 PPR 329-353 aa PF01535 PPR 357-386 aa PF13041 PPR_2 386-432 aa PF13812 PPR_3 386-433 aa PF01535 PPR 389-418 aa PF01535 PPR 492-515 aa PF01535 PPR 563-589 aa PF13041 PPR_2 589-635 aa PF01535 PPR 591-621 aa PF13812 PPR_3 615-674 aa PF01535 PPR 666-689 aa PF20431 E_motif 708-769 aa PF20430 Eplus_motif 775-796 aa PF14432 DYW_deaminase 806-898 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779308.1`	Pfam	`PF12854`	PPR_1	Repeat	144	174	6.6e-29	100.1	PPR repeat
`XP_057779308.1`	Pfam	`PF13812`	PPR_3	Repeat	144	192	1.2e-24	86.8	Pentatricopeptide repeat domain
`XP_057779308.1`	Pfam	`PF13041`	PPR_2	Repeat	145	193	3e-72	239.3	PPR repeat family
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	148	178	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	221	248	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	250	275	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	329	353	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	357	386	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF13041`	PPR_2	Repeat	386	432	3e-72	239.3	PPR repeat family
`XP_057779308.1`	Pfam	`PF13812`	PPR_3	Repeat	386	433	1.2e-24	86.8	Pentatricopeptide repeat domain
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	389	418	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	492	515	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	563	589	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF13041`	PPR_2	Repeat	589	635	3e-72	239.3	PPR repeat family
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	591	621	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF13812`	PPR_3	Repeat	615	674	1.2e-24	86.8	Pentatricopeptide repeat domain
`XP_057779308.1`	Pfam	`PF01535`	PPR	Repeat	666	689	9.3e-65	211.2	PPR repeat
`XP_057779308.1`	Pfam	`PF20431`	E_motif	Repeat	708	769	2.4e-15	57.2	E motif
`XP_057779308.1`	Pfam	`PF20430`	Eplus_motif	Motif	775	796	8.6e-07	29.3	E+ motif
`XP_057779308.1`	Pfam	`PF14432`	DYW_deaminase	Domain	806	898	8e-34	116.1	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923325.1
AGCGATTGTTACCTTGAAAGTGCCTCAAAATACAAATATAGGCTGAAGAAAACAATTTATGTGAGTCAAACTAATTCCAAATACATTTTGTTTTCTCAACCCAAATATTCTGAGTCTAACAGTTTCTAAACTTGGCGCCTCACTTTAATGGCGGCCCTTATCCACCTCCACCATCCTCCCTTCGACTCCGCCGCCTCCTCTCCTCCCTCTCACCTCCTCAAATCCTCTACTCCCATAAAAATCACGTGTTTCCTTTCTCC...

CDS

1 records

下载 CDS FASTA

LOC130997895
ATGGCGGCCCTTATCCACCTCCACCATCCTCCCTTCGACTCCGCCGCCTCCTCTCCTCCCTCTCACCTCCTCAAATCCTCTACTCCCATAAAAATCACGTGTTTCCTTTCTCCCTCCAAAACCCCTCTTTCTCTCTCCTCTCCCAAGCCCCAGCTCTTCTCAGCCCCACCATTTTTACTGTCCAAAACTCCACCTTTCGAGCACCTACACACTCCAAAGCTTCCCGATAACATTCAACCGTTGTCCAACGATGAGATTTC...

Protein

1 records

下载 Protein FASTA

XP_057779308.1
MAALIHLHHPPFDSAASSPPSHLLKSSTPIKITCFLSPSKTPLSLSSPKPQLFSAPPFLLSKTPPFEHLHTPKLPDNIQPLSNDEISRLLKLSREHGDVQLGKAVHASIIKFRQDIRLCNSLITSYIELGHLSYAERVFHLIAKPDVVSYTALISGLAKSGRGEEAVALFLEMRVSGIEPNAYAFVAILTACMRLLDLGLGSQIHALSIKTGHANSSYVANAVMGLYGKSGCFDFVIKLFDEMPERDIASWNTVISCVVK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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