Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003923`

染色体: Chr01 坐标: 57480385-57485705 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003923`
名称	SmilChr01G003923
描述	uncharacterized WD repeat-containing protein C2A9.03-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	57480385 - 57485705 / `+`

ID 对照

NCBI Gene ID	`LOC130998006`
GeneID	`130998006`
locus_tag	`-`
NCBI Name	`LOC130998006`
原始查询	`LOC130998006`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835718]; symbol=AT5G56190; hit=AT5G56190; species=arabidopsis; confidence=high
产物	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835718]; symbol=AT5G56190; hit=AT5G56190; species=arabidopsis; confidence=high
Arabidopsis	`AT5G56190` (AT5G56190) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835718] identity=63.6; qcov=0.978; evalue=0; confidence=high
Rice	`Os06g0171900` (SRWD3) - identity=62.7; qcov=0.962; evalue=0; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40); PF10313 (DUF2415)
InterPro	-
eggNOG	-
NR	GeneID:130998006

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779430.1`
2	Cytoplasm	细胞质	1.00000	`XP_057779430.1`
3	Chromosome	染色体	0.00000	`XP_057779430.1`
4	Centromere	着丝粒	0.00000	`XP_057779430.1`
5	Chromatin	染色质	0.00000	`XP_057779430.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:57481168`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:57481197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr1:57484752`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B102,B66,C43,C70
`Chr1:57485121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:57485364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr1:57485397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B101,B15,B86,D7
`Chr1:57485415`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779430.1

439 aa

220

439

WD40

DUF2415

PF00400 WD40 305-340 aa PF10313 DUF2415 356-392 aa

XP_057779436.1

418 aa

209

418

WD40

DUF2415

PF00400 WD40 284-319 aa PF10313 DUF2415 335-371 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779430.1`	Pfam	`PF00400`	WD40	Repeat	305	340	1.3e-12	48.3	WD domain, G-beta repeat
`XP_057779430.1`	Pfam	`PF10313`	DUF2415	Repeat	356	392	0.00015	22.3	Uncharacterised protein domain (DUF2415)
`XP_057779436.1`	Pfam	`PF00400`	WD40	Repeat	284	319	1e-12	48.7	WD domain, G-beta repeat
`XP_057779436.1`	Pfam	`PF10313`	DUF2415	Repeat	335	371	0.00014	22.4	Uncharacterised protein domain (DUF2415)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057923453.1
TGCAATCTATATTTCGCTTCACTCTCTCTCTCTCTCTTCCCAAGTATAAGTCCCAATCTTCCCACCGCCAACGCCAAGGCGGCAACCTTGTCCCTGTCTCTCTACCTTCATATAGCTCGCTTGTCATCATTTCTACTCTATAATATAAATACACACCTTAGGAATAATTTCTATTTTCTCCTTTCATATACCTCTCTTCTCTTCTGCCAACTCCCTCTTATTACTCACTGTTACTGCCTTCACTTTCTGTTGCCTTTTCC...

XM_057923447.1
TCGCTTCACTCTCTCTCTCTCTCTTCCCAAGTATAAGTCCCAATCTTCCCACCGCCAACGCCAAGGCGGCAACCTTGTCCCTGTCTCTCTACCTTCATATAGCTCGCTTGTCATCATTTCTACTCTATAATATAAATACACACCTTAGGAATAATTTCTATTTTCTCCTTTCATATACCTCTCTTCTCTTCTGCCAACTCCCTCTTATTACTCACTGTTACTGCCTTCACTTTCTGTTGCCTTTTCCTTTTTTTGACGCA...

CDS

2 records

下载 CDS FASTA

LOC130998006
ATGTCGTTTAATGGGGTTGATGAACGGTTCTACAGGGTGGACGACGAAAACTTGGTGGATGTTATGGATGGAATTGATGAGGAATACCATGCTGCTGATGATGCAAACCTCGATGAGTATGAGATGATGATGAAAGTGACAGATACATCTTCTTCACAAGCAAGGGAAGGAAAAGATATACAGGGTATTCCATGGGATAGATTAAATATAACCAGAGGAAGCTACCGATTGACTCGTCTCGAACAGTACAGAAATTATGA...

LOC130998006
ATGGATGGAATTGATGAGGAATACCATGCTGCTGATGATGCAAACCTCGATGAGTATGAGATGATGATGAAAGTGACAGATACATCTTCTTCACAAGCAAGGGAAGGAAAAGATATACAGGGTATTCCATGGGATAGATTAAATATAACCAGAGGAAGCTACCGATTGACTCGTCTCGAACAGTACAGAAATTATGAGAATTTACCTTCATCTGGGAGAGCTGCTGATAAGGGGAGCAATTCAACAGACAAAGGAGGTAG...

Protein

2 records

下载 Protein FASTA

XP_057779430.1
MSFNGVDERFYRVDDENLVDVMDGIDEEYHAADDANLDEYEMMMKVTDTSSSQAREGKDIQGIPWDRLNITRGSYRLTRLEQYRNYENLPSSGRAADKGSNSTDKGGRYYEFFHNTRVVKPTFLHFQLRNLVWTTSKHDVYLLANSSIMHWSSLLQNLTEVLNFSGNIEPTERYPGTLLEGFTRTQLSTLAVKDRFLVAGGFHGELICKCLDKSGVSFCTRATHDENAIINAIDIYDTSSGLHFMASSNDCGVREYDMER...

XP_057779436.1
MDGIDEEYHAADDANLDEYEMMMKVTDTSSSQAREGKDIQGIPWDRLNITRGSYRLTRLEQYRNYENLPSSGRAADKGSNSTDKGGRYYEFFHNTRVVKPTFLHFQLRNLVWTTSKHDVYLLANSSIMHWSSLLQNLTEVLNFSGNIEPTERYPGTLLEGFTRTQLSTLAVKDRFLVAGGFHGELICKCLDKSGVSFCTRATHDENAIINAIDIYDTSSGLHFMASSNDCGVREYDMERFQLLNHFHLPWAVNHTSMSPD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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