当前解析结果
SmilChr01G003924| 统一新 Gene ID | SmilChr01G003924 |
|---|---|
| 名称 | SmilChr01G003924 |
| 描述 | probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 57495476 - 57498897 / + |
| NCBI Gene ID | LOC130998023 |
|---|---|
| GeneID | 130998023 |
| locus_tag | - |
| NCBI Name | LOC130998023 |
| 原始查询 | LOC130998023 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 |
| 产物 | probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 |
| Arabidopsis | AT3G28040 (AT3G28040)Leucine-rich receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822428] identity=58.8; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0957100- identity=58.8; qcov=0.923; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998023 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779445.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779445.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779445.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779445.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779445.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:57496120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:57496586 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | B65 |
Chr1:57496586 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | B65 |
Chr1:57496640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:57496832 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B24 |
Chr1:57497203 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr1:57497806 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B54 |
Chr1:57497806 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B54 |
Chr1:57498063 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B26,B3,C29,D4 |
Chr1:57498100 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B113 |
Chr1:57498100 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B113 |
Chr1:57498171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C2,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779445.1PF08263
LRRNT_2 28-68 aa
PF00560
LRR_1 97-116 aa
PF00560
LRR_1 121-141 aa
PF00560
LRR_1 167-189 aa
PF00560
LRR_1 215-233 aa
PF00560
LRR_1 239-260 aa
PF13855
LRR_8 239-296 aa
PF00560
LRR_1 263-285 aa
PF00560
LRR_1 288-308 aa
PF13855
LRR_8 288-346 aa
PF00560
LRR_1 311-333 aa
PF00560
LRR_1 335-357 aa
PF23598
LRR_14 400-552 aa
PF00560
LRR_1 407-427 aa
PF13516
LRR_6 430-443 aa
PF00560
LRR_1 431-452 aa
PF00560
LRR_1 455-475 aa
PF00560
LRR_1 503-523 aa
PF00069
Pkinase 713-981 aa
PF07714
PK_Tyr_Ser-Thr 714-982 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779445.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 28 | 68 | 5e-12 | 46.6 | Leucine rich repeat N-terminal domain |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 97 | 116 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 121 | 141 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 167 | 189 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 215 | 233 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 239 | 260 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 239 | 296 | 8.3e-46 | 154.3 | Leucine rich repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 263 | 285 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 288 | 308 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 288 | 346 | 8.3e-46 | 154.3 | Leucine rich repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 311 | 333 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 335 | 357 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 400 | 552 | 5.4e-29 | 101.8 | Leucine-rich repeat region |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 407 | 427 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 430 | 443 | 1.3e-09 | 38.1 | Leucine Rich repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 431 | 452 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 455 | 475 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 503 | 523 | 5.4e-54 | 169.1 | Leucine Rich Repeat |
XP_057779445.1 |
Pfam | PF00069 |
Pkinase | Domain | 713 | 981 | 2.3e-37 | 129.5 | Protein kinase domain |
XP_057779445.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 714 | 982 | 2.1e-38 | 132.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。