Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G003933

染色体: Chr01 坐标: 57626514-57635669 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G003933
名称SmilChr01G003933
描述uncharacterized SmilChr01G003933
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向57626514 - 57635669 / +

ID 对照

NCBI Gene IDLOC130998091
GeneID130998091
locus_tag-
NCBI NameLOC130998091
原始查询LOC130998091

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:841090]; symbol=AT1G45207; hit=AT1G45207; species=arabidopsis; confidence=high
产物Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:841090]; symbol=AT1G45207; hit=AT1G45207; species=arabidopsis; confidence=high
ArabidopsisAT1G45207 (AT1G45207)
Remorin family protein [Source:NCBI gene (formerly Entrezgene);Acc:841090]
identity=48.1; qcov=0.982; evalue=1.69e-108; confidence=high
RiceOs02g0767000 (OsREM5.1)
-
identity=41.3; qcov=0.767; evalue=1.71e-60; confidence=medium
GO-
KEGG-
PfamPF03763 (Remorin_C)
InterPro-
eggNOG-
NRGeneID:130998091

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 0.80000 XP_057779508.1
2 Cytosol 细胞质基质 0.60000 XP_057779513.1
3 Nucleus 细胞核 0.40000 XP_057779508.1
4 Cytoplasm 细胞质 0.40000 XP_057779513.1
5 Cytoskeleton 细胞骨架 0.20000 XP_057779508.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:57626807 CG C 1bp_deletion frameshift_variant 1 C32
Chr1:57626807 CG C 1bp_deletion CDS_variant 1 C32
Chr1:57626810 C T EMS_canonical_SNV CDS_variant 3 B100,B133,D7
Chr1:57626822 C T EMS_canonical_SNV CDS_variant 1 B66
Chr1:57627506 G A EMS_canonical_SNV CDS_variant 1 B133
Chr1:57627773 C T EMS_canonical_SNV CDS_variant 3 B1,B16,B24
Chr1:57627855 G A EMS_canonical_SNV CDS_variant 2 B100,D7
Chr1:57628021 C CTT 2bp_insertion frameshift_variant 12 B105,B118,B34,B40,B66,B70,B80,C13,C34,C61,C8,D11
Chr1:57628145 C T EMS_canonical_SNV CDS_variant 5 B34,B80,C13,C34,C56
Chr1:57628178 C T EMS_canonical_SNV CDS_variant 1 B73
Chr1:57628198 C T EMS_canonical_SNV stop_gained 6 A19,B105,B118,B18,B66,B70
Chr1:57628233 C T EMS_canonical_SNV CDS_variant 1 B107

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057779508.1
577 aa
N
1
288
577
Remorin_C
C
PF03763 Remorin_C 471-561 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057779508.1 Pfam PF03763 Remorin_C Family 471 561 2.3e-22 79.5 Remorin, C-terminal region

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057923530.1
AAAAGCACCGTTTTCTACGTAAATCCCATAGGCCACAAAGTTTTCAACCCCCCTGCCCCCCTCATGGCCTCACACGATAAGCGCACCATTTTTGTGATACTATATCTAGCTAGTGAGTAATAACAAAAAGAGCTAGCTAATTGTATTCTTATTTTTCATGTAGTCTACTACTGCCTCGCCAGTCACCCCCCCTTCTTTTTTGTTTCCTTCCTTCCTTCCCCACTAAGAATGCCGGAGCTGGGTTTTCAAGATTTGAGGTC...
XM_057923525.1
AAAAGCACCGTTTTCTACGTAAATCCCATAGGCCACAAAGTTTTCAACCCCCCTGCCCCCCTCATGGCCTCACACGATAAGCGCACCATTTTTGTGATACTATATCTAGCTAGTGAGTAATAACAAAAAGAGCTAGCTAATTGTATTCTTATTTTTCATGTAGTCTACTACTGCCTCGCCAGTCACCCCCCCTTCTTTTTTGTTTCCTTCCTTCCTTCCCCACTAAGAATGCCGGAGCTGGGTTTTCAAGATTTGAGGTC...

CDS

3 records

下载 CDS FASTA
LOC130998091
ATGCCGGAGCTGGGTTTTCAAGATTTGAGGTCGGGCCTCAGGGCCCGTGATTTGAGCCCGGATTCCGTCATTTTCACTGCCGAATCCAATTTCACTAGCCTCTTCTCCTCCGCTTCTGCCAGTGTTGAGCGCTGCTCTTTCACCTCAGATGTTCTCGATCAAGAATCTGTCTCCTCTGTTGTTTCTCAACATTTGGCAGGGCATGAATTGTCTGAAGCATTGAGTGGTCCAGATCCAGATCCGAACAAATCAAAATTACT...
LOC130998091
ATGCCGGAGCTGGGTTTTCAAGATTTGAGGTCGGGCCTCAGGGCCCGTGATTTGAGCCCGGATTCCGTCATTTTCACTGCCGAATCCAATTTCACTAGCCTCTTCTCCTCCGCTTCTGCCAGTGTTGAGCGCTGCTCTTTCACCTCAGATGTTCTCGATCAAGAATCTGTCTCCTCTGTTGTTTCTCAACATTTGGCAGGGCATGAATTGTCTGAAGCATTGAGTGGTCCAGATCCAGATCCGAACAAATCAAAATTACT...

Protein

3 records

下载 Protein FASTA
XP_057779508.1
MPELGFQDLRSGLRARDLSPDSVIFTAESNFTSLFSSASASVERCSFTSDVLDQESVSSVVSQHLAGHELSEALSGPDPDPNKSKLLHRNSISLSRKEKLKAQKLDSSEAETTEDENVALDSARNSFSQALKECQDRRLRSEVVLKKVDRRRPASLDLNNPVANAVTSTTTSPRFGVMKKPSATAARRTGTFPSPGTPNYRHPSVGIHKGWSSERIPPHTNASRRNVSTALLPYNNGRTLPSKWEDAERWIVSPVSGDGA...
XP_057779513.1
MPELGFQDLRSGLRARDLSPDSVIFTAESNFTSLFSSASASVERCSFTSDVLDQESVSSVVSQHLAGHELSEALSGPDPDPNKSKLLHRNSISLSRKEKLKAQKLDSSEAETTEDENVALDSARNSFSQALKECQDRRLRSEVVLKKVDRRRPASLDLNNPVANAVTSTTTSPRFGVMKKPSATAARRTGTFPSPGTPNYRHPSVGIHKGWSSERIPPHTNASRRNVSTALLPYNNGRTLPSKWEDAERWIVSPVSGDGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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