当前解析结果
SmilChr08G001568| 统一新 Gene ID | SmilChr08G001568 |
|---|---|
| 名称 | SmilChr08G001568 |
| 描述 | uncharacterized SmilChr08G001568 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12894563 - 12895170 / + |
| NCBI Gene ID | LOC130998093 |
|---|---|
| GeneID | 130998093 |
| locus_tag | - |
| NCBI Name | LOC130998093 |
| 原始查询 | LOC130998093 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os03g0643433; species=rice; confidence=low |
| 产物 | hit=Os03g0643433; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=33.1; qcov=0.872; evalue=1.06e-22; confidence=low |
| Rice | Os03g0643433- identity=34; qcov=0.866; evalue=5.12e-27; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998093 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779509.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057779509.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057779509.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779509.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779509.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12894647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,D4 |
Chr8:12894677 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C75 |
Chr8:12894677 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C75 |
Chr8:12894738 |
T |
TG |
1bp_insertion | frameshift_variant | 19 | B132,B27,B33,B42,B43,B49,B5,B65,B71,B93,B98,C42,C43,C44,C53,C56,C68,C74,C80 |
Chr8:12894769 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B53 |
Chr8:12894769 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:12894819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr8:12894834 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B121 |
Chr8:12894838 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B135,C57,C58,C66 |
Chr8:12894952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:12894954 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B29,B34 |
Chr8:12894954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B29,B34 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。