当前解析结果
SmilChr08G001634| 统一新 Gene ID | SmilChr08G001634 |
|---|---|
| 名称 | SmilChr08G001634 |
| 描述 | uncharacterized SmilChr08G001634 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 13548467 - 13550176 / + |
| NCBI Gene ID | LOC130998097 |
|---|---|
| GeneID | 130998097 |
| locus_tag | - |
| NCBI Name | LOC130998097 |
| 原始查询 | LOC130998097 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=30.2; qcov=0.32; evalue=1.21e-23; confidence=low |
| Rice | Os12g0156200- identity=22.3; qcov=0.378; evalue=3.56e-07; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998097 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779514.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057779514.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057779514.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.40000 | XP_057779514.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057779514.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:13548519 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr8:13549163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C53 |
Chr8:13549274 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr8:13549282 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A19,C18,C22,C27 |
Chr8:13549344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C13,C38,C78 |
Chr8:13549347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B71,B91,C16,C27,C39 |
Chr8:13549351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C27,C39 |
Chr8:13549352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C18,C22,C27 |
Chr8:13549490 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | B66,B75,D6 |
Chr8:13549490 |
A |
AT |
1bp_insertion | CDS_variant | 3 | B66,B75,D6 |
Chr8:13549497 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr8:13549513 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,B53 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。