当前解析结果
SmilChr08G001916| 统一新 Gene ID | SmilChr08G001916 |
|---|---|
| 名称 | SmilChr08G001916 |
| 描述 | uncharacterized SmilChr08G001916 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 16673004 - 16677098 / + |
| NCBI Gene ID | LOC130998129 |
|---|---|
| GeneID | 130998129 |
| locus_tag | - |
| NCBI Name | LOC130998129 |
| 原始查询 | LOC130998129 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT4G29090 (AT4G29090)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829030] identity=28.6; qcov=0.434; evalue=2.54e-70; confidence=low |
| Rice | Os06g0484800- identity=32.2; qcov=0.443; evalue=1.47e-92; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF03372 (Exo_endo_phos); PF13456 (RVT_3); PF13966 (zf-RVT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998129 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779546.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057779546.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057779546.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779546.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779546.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:16673020 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | A22,B101,B25 |
Chr8:16673020 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B101,B25 |
Chr8:16673042 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr8:16673054 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | C41 |
Chr8:16673054 |
T |
TC |
1bp_insertion | CDS_variant | 1 | C41 |
Chr8:16673065 |
G |
GTC |
2bp_insertion | frameshift_variant | 1 | C41 |
Chr8:16673065 |
G |
GTC |
2bp_insertion | CDS_variant | 1 | C41 |
Chr8:16673079 |
G |
GT |
1bp_insertion | frameshift_variant | 39 | A16,A20,A4,A8,B1,B102,B114,B118,B12,B126,B19,B2,B25,B26,B37,B38,B39,B61,B63,B64,B67,B68,B73,B77,B8,B93,B99,C15,C33,C34,C46,C54,C57,C70,C73,C84,C87,D10,D3 |
Chr8:16673108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B129,C11,C69 |
Chr8:16673109 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B131,B90,C78 |
Chr8:16673120 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C20,C53 |
Chr8:16673150 |
TA |
T |
1bp_deletion | frameshift_variant | 5 | B75,C20,C21,C53,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779546.1PF03372
Exo_endo_phos 4-223 aa
PF00078
RVT_1 425-677 aa
PF13966
zf-RVT 948-1037 aa
PF13456
RVT_3 1146-1268 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779546.1 |
Pfam | PF03372 |
Exo_endo_phos | Domain | 4 | 223 | 4.9e-13 | 50.1 | Endonuclease/Exonuclease/phosphatase family |
XP_057779546.1 |
Pfam | PF00078 |
RVT_1 | Domain | 425 | 677 | 1.1e-28 | 101.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057779546.1 |
Pfam | PF13966 |
zf-RVT | Domain | 948 | 1037 | 2.8e-18 | 67.1 | zinc-binding in reverse transcriptase |
XP_057779546.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1146 | 1268 | 9.9e-19 | 68.2 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。