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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr01G003940

Chromosome: Chr01 Coordinates: 57740197-57742405 Strand: - Biotype: protein_coding

Basic Information

Standard Gene IDSmilChr01G003940
NameSmilChr01G003940
Descriptionuncharacterized SmilChr01G003940
Chromosome / SeqIDChr01 / NC_080387.1
Coordinates and Strand57740197 - 57742405 / -

ID Mapping

NCBI Gene IDLOC130998138
GeneID130998138
locus_tag-
NCBI NameLOC130998138
Original queryLOC130998138

Open ID mapping

Functional Annotation

SourceGFF basic annotation; Arabidopsis/Rice homolog
Descriptionuncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841102]; symbol=AT1G45688; hit=AT1G45688; species=arabidopsis; confidence=high
Productuncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841102]; symbol=AT1G45688; hit=AT1G45688; species=arabidopsis; confidence=high
ArabidopsisAT1G45688 (AT1G45688)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841102]
identity=65.2; qcov=1.06; evalue=9.53e-140; confidence=high
RiceOs04g0689500
-
identity=59.5; qcov=1.02; evalue=1.27e-120; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130998138

Open annotation module

Subcellular Localization Top 5

RankLocationChineseScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057779557.1
2 Nucleus 细胞核 0.00000 XP_057779557.1
3 Chromosome 染色体 0.00000 XP_057779557.1
4 Centromere 着丝粒 0.00000 XP_057779557.1
5 Chromatin 染色质 0.00000 XP_057779557.1

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position REF ALT Type Effect Carriers Samples
Chr1:57740777 G A EMS_canonical_SNV CDS_variant 1 C3
Chr1:57740788 C T EMS_canonical_SNV CDS_variant 2 B19,C74
Chr1:57740997 G A EMS_canonical_SNV CDS_variant 1 B104
Chr1:57741503 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:57741571 G A EMS_canonical_SNV CDS_variant 2 B100,B68
Chr1:57741843 C T EMS_canonical_SNV CDS_variant 1 A24
Chr1:57741858 C T EMS_canonical_SNV CDS_variant 2 A20,A22

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

Open domain search

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XM_057923574.1
ATGAATTTGAAGTTTAAGAAAATTGAAAAGCAATATTAAGCACGTCAAGTTTTCGTAAGAGTCAGCATCAAAGAAAGAGTTTTTCGTAAGGATTTTCCAATACTACAAATTTAATTAGGTCTTTCCTTTTTGAGTAAATATAATATCCACTCAAATTCATAGATAATCCTAATAAATACTATGGACAAAAAAATCCTAATAAATACTATCGACGACTGAAATAAGGAGTAGTAATTAAAATTGCGATATCTTCATTTTAT...

CDS

1 records

Download CDS FASTA
LOC130998138
ATGCACGCGAAGACGGATTCGGAGGTGACGAGCCTGGCGCCGTCGTCGCCGGATCACAACCGGCGGCCGGTGTACTACGTGCAGAGCCCGTCGCGCGACTCGCACGACGGGGAGAAGACGACGACGTCGTTTCACTCGACGCCAGTGCTGGGGAGTCCCATGGGGTCGCCTCCGCGGTCGCACTCCTCCGTCGGCCACCACTCCAGGGAGTCCTCCACCAGCCGCTTCTCCGGCTCGCTCAAGCCTGGATCGAGGAAGGT...

Protein

1 records

Download Protein FASTA
XP_057779557.1
MHAKTDSEVTSLAPSSPDHNRRPVYYVQSPSRDSHDGEKTTTSFHSTPVLGSPMGSPPRSHSSVGHHSRESSTSRFSGSLKPGSRKVSPNDVGSGGRGPRKGSQTNWKDCDVIEEEGLLEDEESQKGLPRRCYFLAFVVGFFVLFSFFALILLGASKPQKPKIAMKSITFERFMVQAGSDSTGVSTDMISMNSTVRLTYRNTATFFGVHVTSTPLDLTYSQLTVGSGTVKKFYQSRKSQRNVAVTVIGDKIPLYGSGASL...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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JBrowse

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