Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G002023`

染色体: Chr08 坐标: 18035345-18038200 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G002023`
名称	SmilChr08G002023
描述	uncharacterized SmilChr08G002023
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	18035345 - 18038200 / `+`

ID 对照

NCBI Gene ID	`LOC130998147`
GeneID	`130998147`
locus_tag	`-`
NCBI Name	`LOC130998147`
原始查询	`LOC130998147`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821009]; symbol=AT3G17450; hit=AT3G17450; species=arabidopsis; confidence=low
产物	hAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821009]; symbol=AT3G17450; hit=AT3G17450; species=arabidopsis; confidence=low
Arabidopsis	`AT3G17450` (AT3G17450) hAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:821009] identity=32.9; qcov=0.943; evalue=2.93e-119; confidence=low
Rice	`Os03g0822900` - identity=31; qcov=0.962; evalue=1.6e-113; confidence=low
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF02892 (zf-BED); PF04937 (DUF659); PF05699 (Dimer_Tnp_hAT); PF26664 (zf-BED_2)
InterPro	-
eggNOG	-
NR	GeneID:130998147

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779563.1`
2	Chromosome	染色体	0.00000	`XP_057779563.1`
3	Centromere	着丝粒	0.00000	`XP_057779563.1`
4	Chromatin	染色质	0.00000	`XP_057779563.1`
5	Telomere	端粒	0.00000	`XP_057779563.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:18035367`	`G`	`A`	EMS_canonical_SNV	stop_gained	7	B1,B100,B22,B36,B93,C29,C87
`Chr8:18035455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr8:18035460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr8:18035534`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C21
`Chr8:18035534`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr8:18035679`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B4
`Chr8:18035679`	`G`	`GA`	1bp_insertion	CDS_variant	1	B4
`Chr8:18035684`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,A9,B80,C48,C55
`Chr8:18036149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr8:18036241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,A9,B80,C48,C55
`Chr8:18036430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr8:18036608`	`C`	`T`	EMS_canonical_SNV	stop_gained	3	B112,B63,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779563.1

754 aa

377

754

zf-BED

zf-BED_2

DUF659

Dimer_Tnp_hAT

PF02892 zf-BED 5-49 aa PF26664 zf-BED_2 23-66 aa PF04937 DUF659 192-343 aa PF05699 Dimer_Tnp_hAT 564-628 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779563.1`	Pfam	`PF02892`	zf-BED	Domain	5	49	0.00012	22.8	BED zinc finger
`XP_057779563.1`	Pfam	`PF26664`	zf-BED_2	Domain	23	66	7.8e-12	45.5	BED-like zinc finger
`XP_057779563.1`	Pfam	`PF04937`	DUF659	Domain	192	343	4.6e-57	192.6	Domain of unknown function (DUF659)
`XP_057779563.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	564	628	8.6e-12	45.4	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923580.1
ATGAGTCGAAAGGATCCTGCCTGGAAGTATGGGACAGAAATTCCAAATCCAACTGGAAAACCACATAAGTATTTTGAATGCAATTTTTGCAAACAACAAATTAAAGGTGGCGTTGCAAGAATGAAGGATCACCTTGCTTGGACCCATAGGAATGTGAAAGCTTGCCCAAAAGTTCCTGATGAAGTCAAACAGGAAATTTTGGATTATGTGAAGAGGGGGACGACAGCTAAGGAAAAGCGACAGGAAAAATTTTATGATAT...

CDS

1 records

下载 CDS FASTA

LOC130998147
ATGAGTCGAAAGGATCCTGCCTGGAAGTATGGGACAGAAATTCCAAATCCAACTGGAAAACCACATAAGTATTTTGAATGCAATTTTTGCAAACAACAAATTAAAGGTGGCGTTGCAAGAATGAAGGATCACCTTGCTTGGACCCATAGGAATGTGAAAGCTTGCCCAAAAGTTCCTGATGAAGTCAAACAGGAAATTTTGGATTATGTGAAGAGGGGGACGACAGCTAAGGAAAAGCGACAGGAAAAATTTTATGATAT...

Protein

1 records

下载 Protein FASTA

XP_057779563.1
MSRKDPAWKYGTEIPNPTGKPHKYFECNFCKQQIKGGVARMKDHLAWTHRNVKACPKVPDEVKQEILDYVKRGTTAKEKRQEKFYDMVDAGAYFRGNSNPACEVADDTRSIRGPMDKFLVHVDDNTDGIPDKQAANPPQDMSLHVKEARKQVAMDIGRFFFENGISFNCIESPSFVSMCRSIGLYGKGLKVPSRHELSTWILKEEVKTTDVIVDDIKRSWIQTGVSILSDGWKDMRGRSLINFLVNNPHGTVFLRSIDAS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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