当前解析结果
SmilChr08G002101| 统一新 Gene ID | SmilChr08G002101 |
|---|---|
| 名称 | SmilChr08G002101 |
| 描述 | uncharacterized SmilChr08G002101 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 18877936 - 18882348 / + |
| NCBI Gene ID | LOC130998158 |
|---|---|
| GeneID | 130998158 |
| locus_tag | - |
| NCBI Name | LOC130998158 |
| 原始查询 | LOC130998158 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=medium |
| 产物 | hit=Os04g0191000; species=rice; confidence=medium |
| Arabidopsis | ATMG00860- identity=57.4; qcov=0.094; evalue=2.86e-43; confidence=weak |
| Rice | Os04g0191000- identity=37.5; qcov=0.835; evalue=0; confidence=medium |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF08284 (RVP_2); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF19259 (Ty3_capsid); PF24626 (SH3_Tf2-1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998158 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779573.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057779573.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057779573.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779573.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779573.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:18877944 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,B5 |
Chr8:18877960 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr8:18877986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,B52,C29,C35,C87 |
Chr8:18877999 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:18878061 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,C68 |
Chr8:18878191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B19,B22,C56 |
Chr8:18878201 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,C56 |
Chr8:18878227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B122,B4,C50 |
Chr8:18878238 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr8:18878247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B46,C37,C69 |
Chr8:18878251 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A22 |
Chr8:18878251 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779573.1PF19259
Ty3_capsid 116-240 aa
PF08284
RVP_2 358-456 aa
PF00078
RVT_1 608-768 aa
PF17919
RT_RNaseH_2 830-924 aa
PF17917
RT_RNaseH 855-952 aa
PF17921
Integrase_H2C2 1043-1097 aa
PF24626
SH3_Tf2-1 1238-1300 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779573.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 116 | 240 | 7.2e-13 | 49.1 | Ty3 transposon capsid-like protein |
XP_057779573.1 |
Pfam | PF08284 |
RVP_2 | Domain | 358 | 456 | 2.3e-07 | 31.4 | Retroviral aspartyl protease |
XP_057779573.1 |
Pfam | PF00078 |
RVT_1 | Domain | 608 | 768 | 2.6e-36 | 126.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057779573.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 830 | 924 | 6.2e-29 | 100.7 | RNase H-like domain found in reverse transcriptase |
XP_057779573.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 855 | 952 | 9.7e-27 | 93.9 | RNase H-like domain found in reverse transcriptase |
XP_057779573.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 1043 | 1097 | 1.3e-17 | 64.4 | Integrase zinc binding domain |
XP_057779573.1 |
Pfam | PF24626 |
SH3_Tf2-1 | Domain | 1238 | 1300 | 4.2e-23 | 81.9 | Tf2-1-like, SH3 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。