当前解析结果
SmilChr08G002181| 统一新 Gene ID | SmilChr08G002181 |
|---|---|
| 名称 | SmilChr08G002181 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 19708203 - 19711435 / - |
| NCBI Gene ID | LOC130998167 |
|---|---|
| GeneID | 130998167 |
| locus_tag | - |
| NCBI Name | LOC130998167 |
| 原始查询 | LOC130998167 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK2 |
| Arabidopsis | AT5G38280 (PR5K)PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=56; qcov=0.414; evalue=8.09e-120; confidence=low |
| Rice | Os03g0828800- identity=38; qcov=0.99; evalue=1.5e-138; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998167 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779582.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779582.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779582.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779582.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779582.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:19708240 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C11,C21,C69 |
Chr8:19708524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:19708677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr8:19709028 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr8:19709900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr8:19710295 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B6 |
Chr8:19710295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:19710417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr8:19710980 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr8:19711001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B18 |
Chr8:19711140 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B13,B66,B8 |
Chr8:19711247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779582.1PF01453
B_lectin 70-154 aa
PF00954
S_locus_glycop 260-306 aa
PF07714
PK_Tyr_Ser-Thr 491-761 aa
PF00069
Pkinase 492-760 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779582.1 |
Pfam | PF01453 |
B_lectin | Repeat | 70 | 154 | 4e-23 | 82.6 | D-mannose binding lectin |
XP_057779582.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 260 | 306 | 2e-06 | 29.0 | S-locus glycoprotein domain |
XP_057779582.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 491 | 761 | 6.6e-45 | 154.2 | Protein tyrosine and serine/threonine kinase |
XP_057779582.1 |
Pfam | PF00069 |
Pkinase | Domain | 492 | 760 | 5e-48 | 164.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。