Resolved gene
SmilChr08G002217| Standard Gene ID | SmilChr08G002217 |
|---|---|
| Name | SmilChr08G002217 |
| Description | zinc finger BED domain-containing protein RICESLEEPER 3-like |
| Chromosome / SeqID | Chr08 / NC_080394.1 |
| Coordinates and Strand | 20173422 - 20174546 / - |
| NCBI Gene ID | LOC130998173 |
|---|---|
| GeneID | 130998173 |
| locus_tag | - |
| NCBI Name | LOC130998173 |
| Original query | LOC130998173 |
| Source | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| Description | zinc finger BED domain-containing protein RICESLEEPER 3-like |
| Product | zinc finger BED domain-containing protein RICESLEEPER 3-like |
| Arabidopsis | AT3G42170 (DAYSLEEPER)BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=28.6; qcov=0.903; evalue=4.98e-23; confidence=low |
| Rice | Os07g0525300- identity=42.5; qcov=0.758; evalue=2.02e-47; confidence=medium |
| GO | GO:0003677 (DNA binding) |
| KEGG | - |
| Pfam | PF02892 (zf-BED) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998173 |
| Rank | Location | Chinese | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779587.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057779587.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057779587.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057779587.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057779587.1 |
The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.
| Position | REF | ALT | Type | Effect | Carriers | Samples |
|---|---|---|---|---|---|---|
Chr8:20173485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,C65 |
Chr8:20173495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B42,B43 |
Chr8:20173534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B117,B12 |
Chr8:20173547 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B117,B12 |
Chr8:20173603 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B117,B12 |
Chr8:20173835 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B35 |
Chr8:20173921 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B79,C53,C68 |
Chr8:20173973 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr8:20173987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,C53 |
Chr8:20174004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B105,B123,C23 |
Chr8:20174032 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B123,B71,C40 |
Chr8:20174113 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.
XP_057779587.1PF02892
zf-BED 61-101 aa
| Protein ID | Source | Domain ID | Domain name | Type | Start aa | End aa | E-value | Score | Description |
|---|---|---|---|---|---|---|---|---|---|
XP_057779587.1 |
Pfam | PF02892 |
zf-BED | Domain | 61 | 101 | 1.5e-07 | 32.0 | BED zinc finger |
Download genomic DNA (gene region only)
Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.
1 records
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