当前解析结果
SmilChr08G002401| 统一新 Gene ID | SmilChr08G002401 |
|---|---|
| 名称 | SmilChr08G002401 |
| 描述 | uncharacterized SmilChr08G002401 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22793744 - 22794823 / + |
| NCBI Gene ID | LOC130998204 |
|---|---|
| GeneID | 130998204 |
| locus_tag | - |
| NCBI Name | LOC130998204 |
| 原始查询 | LOC130998204 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817895]; symbol=AT2G33320; hit=AT2G33320; species=arabidopsis; confidence=low |
| 产物 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817895]; symbol=AT2G33320; hit=AT2G33320; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G33320 (AT2G33320)Calcium-dependent lipid-binding (CaLB domain) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817895] identity=49.3; qcov=0.423; evalue=3.3e-36; confidence=low |
| Rice | Os01g0659800- identity=33.8; qcov=0.396; evalue=1.98e-12; confidence=low |
| GO | GO:0006952 (defense response) |
| KEGG | - |
| Pfam | PF00168 (C2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998204 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057779617.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057779617.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779617.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779617.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779617.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22793804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,A3 |
Chr8:22793905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:22793950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:22794008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr8:22794017 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B120 |
Chr8:22794138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr8:22794180 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B111,B51,C29,C35 |
Chr8:22794196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B127,B66,B8,C17 |
Chr8:22794235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B103,B135,B35,C61,C62 |
Chr8:22794267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B118,B24,B44,B60 |
Chr8:22794293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:22794298 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779617.1PF00168
C2 32-121 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779617.1 |
Pfam | PF00168 |
C2 | Domain | 32 | 121 | 3.3e-14 | 53.7 | C2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。