当前解析结果
SmilChr08G002418| 统一新 Gene ID | SmilChr08G002418 |
|---|---|
| 名称 | SmilChr08G002418 |
| 描述 | uncharacterized SmilChr08G002418 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 22974539 - 22976256 / - |
| NCBI Gene ID | LOC130998207 |
|---|---|
| GeneID | 130998207 |
| locus_tag | - |
| NCBI Name | LOC130998207 |
| 原始查询 | LOC130998207 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT3G24255 (AT3G24255)RNA-directed DNA polymerase (reverse transcriptase)-related family protein [Source:NCBI gene (formerly Entrezgene);Acc:822013] identity=30.4; qcov=0.285; evalue=1.15e-14; confidence=weak |
| Rice | Os06g0484800- identity=25.6; qcov=1.18; evalue=5.53e-53; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998207 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779620.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057779620.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057779620.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779620.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779620.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:22974604 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:22974623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B21,B7,D3 |
Chr8:22974677 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B124 |
Chr8:22974691 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr8:22974699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B20,B47,C33,C72 |
Chr8:22974707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr8:22974751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B21 |
Chr8:22974758 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B97 |
Chr8:22974758 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B97 |
Chr8:22974761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C82 |
Chr8:22974764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B24,C82 |
Chr8:22974784 |
G |
A |
EMS_canonical_SNV | stop_gained | 14 | A20,A3,B105,B118,B124,B130,B21,B40,B56,B75,B80,C26,C83,D6 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。