Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003950`

染色体: Chr01 坐标: 57878392-57882862 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003950`
名称	SmilChr01G003950
描述	protein RICE SALT SENSITIVE 3-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	57878392 - 57882862 / `+`

ID 对照

NCBI Gene ID	`LOC130998216`
GeneID	`130998216`
locus_tag	`-`
NCBI Name	`LOC130998216`
原始查询	`LOC130998216`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein RICE SALT SENSITIVE 3-like
产物	protein RICE SALT SENSITIVE 3-like
Arabidopsis	`AT1G60060` (AT1G60060) Serine/threonine-protein kinase WNK (With No Lysine)-like protein [Source:NCBI gene (formerly Entrezgene);Acc:842300] identity=43.6; qcov=0.856; evalue=1.52e-75; confidence=medium
Rice	`Os06g0233800` - identity=55.6; qcov=0.583; evalue=2.36e-77; confidence=medium
GO	-
KEGG	-
Pfam	PF14215 (bHLH-MYC_N)
InterPro	-
eggNOG	-
NR	GeneID:130998216

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057779631.1`
2	Chromosome	染色体	0.00000	`XP_057779631.1`
3	Centromere	着丝粒	0.00000	`XP_057779631.1`
4	Chromatin	染色质	0.00000	`XP_057779631.1`
5	Telomere	端粒	0.00000	`XP_057779631.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:57879053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:57879054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A2,A5,C2,C32,C68
`Chr1:57879098`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A24,B3
`Chr1:57881167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B130
`Chr1:57881392`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B22,B41
`Chr1:57881744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C16,D11
`Chr1:57882484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B123,B24
`Chr1:57882569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B21,C80
`Chr1:57882619`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779631.1

379 aa

190

379

bHLH-MYC_N

PF14215 bHLH-MYC_N 103-200 aa

XP_057779636.1

378 aa

189

378

bHLH-MYC_N

PF14215 bHLH-MYC_N 103-199 aa

XP_057779641.1

368 aa

184

368

bHLH-MYC_N

PF14215 bHLH-MYC_N 6-71 aa PF14215 bHLH-MYC_N 92-189 aa

XP_057779648.1

367 aa

184

367

bHLH-MYC_N

PF14215 bHLH-MYC_N 6-71 aa PF14215 bHLH-MYC_N 92-188 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779631.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	103	200	5.6e-27	95.9	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057779636.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	103	199	7.3e-27	95.5	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057779641.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	6	71	3.7e-28	99.8	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057779641.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	92	189	3.7e-28	99.8	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057779648.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	6	71	4.8e-28	99.4	bHLH-MYC and R2R3-MYB transcription factors N-terminal
`XP_057779648.1`	Pfam	`PF14215`	bHLH-MYC_N	Family	92	188	4.8e-28	99.4	bHLH-MYC and R2R3-MYB transcription factors N-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057923653.1
AACAAAATAAATCTCTCTAGTATTGTCAGCTCCTATTTTAACTTGCCGTTGATGCCACTTGATGTCATAAATGTTTCAAACTTTAGAAGGCTACTTATGGCAATCTTTTCATAAAATTTTATCACTGGCTGAAAAGAATGCCACTGCATATATGAGCTGTAGGTGCAGTGAGCTCCTTTTGTGTGGTTGTGAATATGAGATTCTACTCTTAGGATATTGTTTTTCATAAATCACAAGAGATGGATGATAACTTTTTCTCA...

XM_057923648.1
TATGAGCTGTAGGTGCAGTGAGCTCCTTTTGTGTGGTTGTGAATATGAGATTCTACTCTTAGGATATTGTTTTTCATAAATCACAAGAGATGGATGATAACTTTTTCTCATGGAATAGATGAGAAATGAACTTTAGCGTTACAGGAATTCATCTTTGAAAGCTCTCTATCATAAAAGATAAGGGAAGCTAGTAGGGAAGTTGATATTATTGGTGGGACGGAAGGGCCATGTTATTGATGTCACTGTAGAAAGGGGTAGCA...

CDS

4 records

下载 CDS FASTA

LOC130998216
ATGGTCGGGGAAAAGGTTAAATGCAGAAAGGCACTCAAGTTTTTCTACCTCCTGCATACACTCAGAAGCCTATGTGCATGCTCCGATTCTTCTCCGACTCCTTCAAAGTGGGTGTACGCCGTCTTTTGGAGGATTCTTCCCAGAAATTTTCCACCTCCAAAGTGGGATCATGGAGGCGGCCTCCTCGATCGAGCTAAGGGAAACAAGAGGAACTGGATTCTTGTTTGGGAAGACGGGTTCTGTGATTTTTTTGAGTGCGA...

Protein

4 records

下载 Protein FASTA

XP_057779631.1
MVGEKVKCRKALKFFYLLHTLRSLCACSDSSPTPSKWVYAVFWRILPRNFPPPKWDHGGGLLDRAKGNKRNWILVWEDGFCDFFECERAGNGFGRRRFGADIFFKMTHEVYNFGEGLVGKVASDNSHKWVFRDTPTENDPTFISSWNVSIDPQPRAWEAQFSSGIETIALISVREGAIQLGSFDKVDEDLNMVLNIQRKFSYLQSIPGIYMTQRPNHPIHNPQLDYNTAPRLMQATATLSDKHQMIGFERQNCLGYNNSP...

XP_057779636.1
MVGEKVKCRKALKFFYLLHTLRSLCACSDSSPTPSKWVYAVFWRILPRNFPPPKWDHGGGLLDRAKGNKRNWILVWEDGFCDFFECERAGNGFGRRRFGADIFFKMTHEVYNFGEGLVGKVASDNSHKWVFRDTPTENDPTFISSWNVSIDPPRAWEAQFSSGIETIALISVREGAIQLGSFDKVDEDLNMVLNIQRKFSYLQSIPGIYMTQRPNHPIHNPQLDYNTAPRLMQATATLSDKHQMIGFERQNCLGYNNSPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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