当前解析结果
SmilChr08G002500| 统一新 Gene ID | SmilChr08G002500 |
|---|---|
| 名称 | SmilChr08G002500 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 24037595 - 24038362 / - |
| NCBI Gene ID | LOC130998222 |
|---|---|
| GeneID | 130998222 |
| locus_tag | - |
| NCBI Name | LOC130998222 |
| 原始查询 | LOC130998222 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=41; qcov=0.698; evalue=3.37e-32; confidence=medium |
| Rice | Os08g0125300- identity=42.1; qcov=0.996; evalue=3.72e-54; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998222 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779634.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057779634.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779634.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779634.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779634.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:24037598 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,C20 |
Chr8:24037619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A18 |
Chr8:24037621 |
G |
A |
EMS_canonical_SNV | stop_gained | 8 | A19,B113,B128,B13,B86,C19,C5,D6 |
Chr8:24037626 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr8:24037652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr8:24037669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr8:24037689 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B84 |
Chr8:24037689 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B84 |
Chr8:24037713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr8:24037741 |
A |
ATC |
2bp_insertion | frameshift_variant | 3 | B114,B57,C87 |
Chr8:24037741 |
A |
ATC |
2bp_insertion | CDS_variant | 3 | B114,B57,C87 |
Chr8:24037743 |
CTG |
C |
2bp_deletion | frameshift_variant | 3 | B114,B57,C87 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。