Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G002676

染色体: Chr08 坐标: 26280905-26281705 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G002676
名称SmilChr08G002676
描述uncharacterized SmilChr08G002676
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向26280905 - 26281705 / +

ID 对照

NCBI Gene IDLOC130998251
GeneID130998251
locus_tag-
NCBI NameLOC130998251
原始查询LOC130998251

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839239]; symbol=AT1G01180; hit=AT1G01180; species=arabidopsis; confidence=high
产物S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839239]; symbol=AT1G01180; hit=AT1G01180; species=arabidopsis; confidence=high
ArabidopsisAT1G01180 (AT1G01180)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839239]
identity=49.8; qcov=0.996; evalue=1.36e-86; confidence=high
RiceOs09g0518900 (P0498F03.12)
-
identity=52; qcov=0.759; evalue=1.82e-67; confidence=high
GO-
KEGG-
PfamPF13578 (Methyltransf_24)
InterPro-
eggNOG-
NRGeneID:130998251

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057779666.1
2 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057779666.1
3 Trans-golgi network Trans-golgi network 0.20000 XP_057779666.1
4 Nucleus 细胞核 0.00000 XP_057779666.1
5 Chromosome 染色体 0.00000 XP_057779666.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:26280954 AC A 1bp_deletion frameshift_variant 1 B124
Chr8:26280954 AC A 1bp_deletion CDS_variant 1 B124
Chr8:26280961 C T EMS_canonical_SNV CDS_variant 2 C1,C47
Chr8:26281005 C T EMS_canonical_SNV CDS_variant 1 B38
Chr8:26281111 C T EMS_canonical_SNV CDS_variant 2 B59,C55
Chr8:26281133 G A EMS_canonical_SNV CDS_variant 2 B59,C55
Chr8:26281378 G A EMS_canonical_SNV CDS_variant 1 C36
Chr8:26281701 A AC 1bp_insertion frameshift_variant 120 A13,A14,A2,A22,A24,A5,A6,B101,B104,B107,B112,B115,B12,B120,B122,B123,B124,B125,B127,B131,B133,B134,B136,B137,B138,B139,B14,B140,B15,B19,B2,B22,B23,B26,B28,B30,B32,B36,B38,B39,B4,B44,B47,B48,B5,B50,B52,B53,B54,B55,B60,B65,B66,B68,B69,B7,B71,B73,B78,B79,B80,B82,B85,B87,B88,B91,B93,B95,B98,C1,C11,C12,C13,C16,C17,C19,C20,C21,C24,C27,C34,C36,C37,C38,C4,C41,C42,C43,C45,C46,C48,C49,C5,C50,C52,C55,C56,C60,C64,C65,C66,C69,C7,C70,C72,C74,C75,C77,C79,C8,C80,C81,C82,C87,C9,D10,D11,D3,D4,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057779666.1
266 aa
N
1
133
266
Methyltransf_24
C
PF13578 Methyltransf_24 140-266 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057779666.1 Pfam PF13578 Methyltransf_24 Domain 140 266 4.6e-10 41.1 Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057923683.1
ATGAATTTGGACGATCGCGAGCAGCAATTAGCCCCACCGCAAGGGCACCACCACCTCCGGCGGCGGAACCAGTATCTGAAACGGCTGGAGGCGACGGTGTCGAAGCCTAGGGCATACGTCATCCTGCTAATCCTGGCATTCATCCTTGGCTACCTCTCCCACTCGCACCCGCTCCTCTCCCAAACCGCGAGCGACGTATTCGAGCACAACAACTTCTCCGACGAGTGCGGCGCGCCGGTGGCGGCGGATGACGTGCGGCG...

CDS

1 records

下载 CDS FASTA
LOC130998251
ATGAATTTGGACGATCGCGAGCAGCAATTAGCCCCACCGCAAGGGCACCACCACCTCCGGCGGCGGAACCAGTATCTGAAACGGCTGGAGGCGACGGTGTCGAAGCCTAGGGCATACGTCATCCTGCTAATCCTGGCATTCATCCTTGGCTACCTCTCCCACTCGCACCCGCTCCTCTCCCAAACCGCGAGCGACGTATTCGAGCACAACAACTTCTCCGACGAGTGCGGCGCGCCGGTGGCGGCGGATGACGTGCGGCG...

Protein

1 records

下载 Protein FASTA
XP_057779666.1
MNLDDREQQLAPPQGHHHLRRRNQYLKRLEATVSKPRAYVILLILAFILGYLSHSHPLLSQTASDVFEHNNFSDECGAPVAADDVRRTIMGRVFNGSSPWESFPPAHVRPLLWQEWNKGWGSNMPVFEHLIEQVRPRTIIEVGTFLGASATHMVGLTRKLGLDTQIVCIDDFRGWPGYYDEEKSLKMVNGDSLLLYQFMQNVVRANATDNIIMLPFSAGTALGGLCDWGVYGDLVEVDAAHDFHSAWVDINHAFKVLKPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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