当前解析结果
SmilChr08G002676| 统一新 Gene ID | SmilChr08G002676 |
|---|---|
| 名称 | SmilChr08G002676 |
| 描述 | uncharacterized SmilChr08G002676 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 26280905 - 26281705 / + |
| NCBI Gene ID | LOC130998251 |
|---|---|
| GeneID | 130998251 |
| locus_tag | - |
| NCBI Name | LOC130998251 |
| 原始查询 | LOC130998251 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839239]; symbol=AT1G01180; hit=AT1G01180; species=arabidopsis; confidence=high |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839239]; symbol=AT1G01180; hit=AT1G01180; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G01180 (AT1G01180)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839239] identity=49.8; qcov=0.996; evalue=1.36e-86; confidence=high |
| Rice | Os09g0518900 (P0498F03.12)- identity=52; qcov=0.759; evalue=1.82e-67; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF13578 (Methyltransf_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998251 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057779666.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057779666.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.20000 | XP_057779666.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057779666.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779666.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:26280954 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B124 |
Chr8:26280954 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B124 |
Chr8:26280961 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C1,C47 |
Chr8:26281005 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B38 |
Chr8:26281111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B59,C55 |
Chr8:26281133 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C55 |
Chr8:26281378 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr8:26281701 |
A |
AC |
1bp_insertion | frameshift_variant | 120 | A13,A14,A2,A22,A24,A5,A6,B101,B104,B107,B112,B115,B12,B120,B122,B123,B124,B125,B127,B131,B133,B134,B136,B137,B138,B139,B14,B140,B15,B19,B2,B22,B23,B26,B28,B30,B32,B36,B38,B39,B4,B44,B47,B48,B5,B50,B52,B53,B54,B55,B60,B65,B66,B68,B69,B7,B71,B73,B78,B79,B80,B82,B85,B87,B88,B91,B93,B95,B98,C1,C11,C12,C13,C16,C17,C19,C20,C21,C24,C27,C34,C36,C37,C38,C4,C41,C42,C43,C45,C46,C48,C49,C5,C50,C52,C55,C56,C60,C64,C65,C66,C69,C7,C70,C72,C74,C75,C77,C79,C8,C80,C81,C82,C87,C9,D10,D11,D3,D4,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779666.1PF13578
Methyltransf_24 140-266 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779666.1 |
Pfam | PF13578 |
Methyltransf_24 | Domain | 140 | 266 | 4.6e-10 | 41.1 | Methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。