当前解析结果
SmilChr01G003967| 统一新 Gene ID | SmilChr01G003967 |
|---|---|
| 名称 | SmilChr01G003967 |
| 描述 | polyadenylate-binding protein 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 58127819 - 58132541 / + |
| NCBI Gene ID | LOC130998352 |
|---|---|
| GeneID | 130998352 |
| locus_tag | - |
| NCBI Name | LOC130998352 |
| 原始查询 | LOC130998352 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | polyadenylate-binding protein 2-like |
| 产物 | polyadenylate-binding protein 2-like |
| Arabidopsis | AT4G34110 (PAB2)poly(A) binding protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:829557] identity=69.5; qcov=1.01; evalue=0; confidence=high |
| Rice | Os08g0314800 (Cen8.t01003)- identity=71.6; qcov=0.966; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:1990904 (ribonucleoprotein complex) |
| KEGG | smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00076 (RRM_1); PF00658 (MLLE); PF13893 (RRM_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998352 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779761.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 1.00000 | XP_057779761.1 |
| 3 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.80000 | XP_057779761.1 |
| 4 | Stress granule | Stress granule | 0.80000 | XP_057779761.1 |
| 5 | Cytosol | 细胞质基质 | 0.60000 | XP_057779761.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:58128129 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr1:58128144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C61,C64 |
Chr1:58128145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,C61,C64 |
Chr1:58128148 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B91,C6 |
Chr1:58128148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C6 |
Chr1:58128150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,A6,B140,B69,D3 |
Chr1:58128160 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr1:58128161 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,C76,C80 |
Chr1:58128162 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr1:58128163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:58128164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr1:58128166 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C61,C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779761.1PF13893
RRM_5 21-113 aa
PF00076
RRM_1 36-106 aa
PF00076
RRM_1 124-192 aa
PF13893
RRM_5 124-194 aa
PF00076
RRM_1 215-283 aa
PF00076
RRM_1 318-386 aa
PF13893
RRM_5 318-395 aa
PF00658
MLLE 560-625 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779761.1 |
Pfam | PF13893 |
RRM_5 | Domain | 21 | 113 | 4.6e-11 | 43.2 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
XP_057779761.1 |
Pfam | PF00076 |
RRM_1 | Domain | 36 | 106 | 2.7e-92 | 303.4 | RNA recognition motif |
XP_057779761.1 |
Pfam | PF00076 |
RRM_1 | Domain | 124 | 192 | 2.7e-92 | 303.4 | RNA recognition motif |
XP_057779761.1 |
Pfam | PF13893 |
RRM_5 | Domain | 124 | 194 | 4.6e-11 | 43.2 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
XP_057779761.1 |
Pfam | PF00076 |
RRM_1 | Domain | 215 | 283 | 2.7e-92 | 303.4 | RNA recognition motif |
XP_057779761.1 |
Pfam | PF00076 |
RRM_1 | Domain | 318 | 386 | 2.7e-92 | 303.4 | RNA recognition motif |
XP_057779761.1 |
Pfam | PF13893 |
RRM_5 | Domain | 318 | 395 | 4.6e-11 | 43.2 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
XP_057779761.1 |
Pfam | PF00658 |
MLLE | Domain | 560 | 625 | 4.9e-30 | 104.1 | MLLE domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。