当前解析结果
SmilChr08G003380| 统一新 Gene ID | SmilChr08G003380 |
|---|---|
| 名称 | SmilChr08G003380 |
| 描述 | uncharacterized SmilChr08G003380 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 35444434 - 35454844 / + |
| NCBI Gene ID | LOC130998394 |
|---|---|
| GeneID | 130998394 |
| locus_tag | - |
| NCBI Name | LOC130998394 |
| 原始查询 | LOC130998394 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0106900; species=rice; confidence=medium |
| 产物 | hit=Os08g0106900; species=rice; confidence=medium |
| Arabidopsis | AT5G41980 (AT5G41980)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=33.9; qcov=0.638; evalue=7.33e-60; confidence=low |
| Rice | Os08g0106900- identity=38.8; qcov=0.692; evalue=2.89e-80; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998394 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779796.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057779796.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057779796.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779796.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779796.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:35444453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr8:35444459 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C46 |
Chr8:35444461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,B69,C3 |
Chr8:35444481 |
GGT |
G |
2bp_deletion | frameshift_variant | 2 | C5,D5 |
Chr8:35444481 |
GGT |
G |
2bp_deletion | CDS_variant | 2 | C5,D5 |
Chr8:35444502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B69,B91,C3,C46 |
Chr8:35444512 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr8:35444515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C46 |
Chr8:35444549 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr8:35444552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B86,C28 |
Chr8:35444554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,C42,C64 |
Chr8:35444559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,C42,C64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779796.1PF26138
DUF8040 205-283 aa
PF01609
DDE_Tnp_1 307-473 aa
PF04827
Plant_tran 307-478 aa
PF13359
DDE_Tnp_4 314-475 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779796.1 |
Pfam | PF26138 |
DUF8040 | Domain | 205 | 283 | 5.1e-22 | 78.3 | Domain of unknown function (DUF8040) |
XP_057779796.1 |
Pfam | PF01609 |
DDE_Tnp_1 | Domain | 307 | 473 | 1.3e-10 | 42.1 | Transposase DDE domain |
XP_057779796.1 |
Pfam | PF04827 |
Plant_tran | Family | 307 | 478 | 1.8e-05 | 25.2 | Plant transposon protein |
XP_057779796.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 314 | 475 | 1.7e-25 | 90.2 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。