当前解析结果
SmilChr08G003613| 统一新 Gene ID | SmilChr08G003613 |
|---|---|
| 名称 | SmilChr08G003613 |
| 描述 | DNA repair protein XRCC3 homolog |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 39261498 - 39262346 / + |
| NCBI Gene ID | LOC130998461 |
|---|---|
| GeneID | 130998461 |
| locus_tag | - |
| NCBI Name | LOC130998461 |
| 原始查询 | LOC130998461 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA repair protein XRCC3 homolog |
| 产物 | DNA repair protein XRCC3 homolog |
| Arabidopsis | AT5G57450 (XRCC3)homolog of X-ray repair cross complementing 3 (XRCC3) [Source:NCBI gene (formerly Entrezgene);Acc:835850] identity=44.5; qcov=0.996; evalue=8.96e-75; confidence=medium |
| Rice | Os02g0562100 (XRCC3)- identity=40.7; qcov=0.968; evalue=7.29e-47; confidence=medium |
| GO | GO:0000400 (four-way junction DNA binding); GO:0000722 (telomere maintenance via recombination); GO:0005524 (ATP binding); GO:0005657 (replication fork); GO:0033065 (Rad51C-XRCC3 complex); GO:0045003 (double-strand break repair via synthesis-dependent strand annealing); GO:0071140 (resolution of mitotic recombination intermediates); GO:0090656 (t-circle formation); GO:0140664 (ATP-dependent DNA damage sensor activity) |
| KEGG | smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF08423 (Rad51); PF13481 (AAA_25) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998461 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779863.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057779863.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057779863.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057779863.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057779863.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:39261627 |
ACC |
A |
2bp_deletion | frameshift_variant | 17 | A4,B11,B120,B121,B137,B46,B5,B54,B60,B71,B73,B75,C18,C50,C60,C68,D11 |
Chr8:39261635 |
A |
AG |
1bp_insertion | frameshift_variant | 17 | A4,B11,B120,B121,B137,B46,B5,B54,B60,B71,B73,B75,C18,C50,C60,C68,D11 |
Chr8:39261639 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | D11 |
Chr8:39261639 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:39261676 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:39261677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C8,D7 |
Chr8:39261680 |
A |
ATT |
2bp_insertion | frameshift_variant | 5 | A15,B36,C21,C45,C49 |
Chr8:39261680 |
A |
ATT |
2bp_insertion | CDS_variant | 5 | A15,B36,C21,C45,C49 |
Chr8:39261682 |
CA |
C |
1bp_deletion | frameshift_variant | 5 | A15,B36,C21,C45,C49 |
Chr8:39261682 |
CA |
C |
1bp_deletion | CDS_variant | 5 | A15,B36,C21,C45,C49 |
Chr8:39261690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A15,B36,C45 |
Chr8:39261696 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | A15,B36,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779863.1PF08423
Rad51 14-196 aa
PF13481
AAA_25 22-161 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779863.1 |
Pfam | PF08423 |
Rad51 | Domain | 14 | 196 | 9.9e-35 | 120.7 | Rad51 |
XP_057779863.1 |
Pfam | PF13481 |
AAA_25 | Domain | 22 | 161 | 1.5e-06 | 28.7 | AAA domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。