当前解析结果
SmilChr08G003745| 统一新 Gene ID | SmilChr08G003745 |
|---|---|
| 名称 | SmilChr08G003745 |
| 描述 | uncharacterized SmilChr08G003745 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 42443939 - 42446533 / - |
| NCBI Gene ID | LOC130998497 |
|---|---|
| GeneID | 130998497 |
| locus_tag | - |
| NCBI Name | LOC130998497 |
| 原始查询 | LOC130998497 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=26.2; qcov=0.172; evalue=2.5e-09; confidence=weak |
| Rice | Os08g0202300- identity=28.6; qcov=0.284; evalue=5.24e-31; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF17921 (Integrase_H2C2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998497 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779898.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057779898.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057779898.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057779898.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779898.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:42443957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr8:42443964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C47,C69,C72 |
Chr8:42444013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,C20 |
Chr8:42444070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr8:42444083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,B26 |
Chr8:42444121 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B134,C24,C63 |
Chr8:42444202 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C54 |
Chr8:42444202 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C54 |
Chr8:42444240 |
CG |
C |
1bp_deletion | frameshift_variant | 1 | B1 |
Chr8:42444240 |
CG |
C |
1bp_deletion | CDS_variant | 1 | B1 |
Chr8:42444354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr8:42444370 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057779898.1PF00078
RVT_1 1-82 aa
PF17919
RT_RNaseH_2 145-243 aa
PF17917
RT_RNaseH 186-272 aa
PF13456
RVT_3 307-424 aa
PF17921
Integrase_H2C2 516-566 aa
PF00665
rve 581-679 aa
PF31073
DUF8803 804-863 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779898.1 |
Pfam | PF00078 |
RVT_1 | Domain | 1 | 82 | 1e-16 | 62.1 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057779898.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 145 | 243 | 6e-18 | 65.5 | RNase H-like domain found in reverse transcriptase |
XP_057779898.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 186 | 272 | 3.5e-11 | 43.9 | RNase H-like domain found in reverse transcriptase |
XP_057779898.1 |
Pfam | PF13456 |
RVT_3 | Domain | 307 | 424 | 9e-17 | 61.9 | Reverse transcriptase-like |
XP_057779898.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 516 | 566 | 1.8e-08 | 35.1 | Integrase zinc binding domain |
XP_057779898.1 |
Pfam | PF00665 |
rve | Domain | 581 | 679 | 4e-18 | 66.3 | Integrase core domain |
XP_057779898.1 |
Pfam | PF31073 |
DUF8803 | Domain | 804 | 863 | 1.6e-22 | 79.8 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。