Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G003901`

染色体: Chr08 坐标: 46304857-46307216 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G003901`
名称	SmilChr08G003901
描述	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	46304857 - 46307216 / `-`

ID 对照

NCBI Gene ID	`LOC130998551`
GeneID	`130998551`
locus_tag	`-`
NCBI Name	`LOC130998551`
原始查询	`LOC130998551`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic-like
产物	acetyl-coenzyme A carboxylase carboxyl transferase subunit beta%2C chloroplastic-like
Arabidopsis	`ATCG00500` (accD) acetyl-CoA carboxylase beta subunit [Source:NCBI gene (formerly Entrezgene);Acc:844755] identity=68.8; qcov=0.915; evalue=0; confidence=high
Rice	`-` -
GO	GO:0003989 (acetyl-CoA carboxylase activity); GO:0006633 (fatty acid biosynthetic process); GO:0009317 (acetyl-CoA carboxylase complex)
KEGG	smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00640 (Propanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF01039 (Carboxyl_trans)
InterPro	-
eggNOG	-
NR	GeneID:130998551

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057779950.1`
2	Chloroplast	叶绿体	0.20000	`XP_057779950.1`
3	Nucleus	细胞核	0.00000	`XP_057779950.1`
4	Chromosome	染色体	0.00000	`XP_057779950.1`
5	Centromere	着丝粒	0.00000	`XP_057779950.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:46306398`	`CT`	`C`	1bp_deletion	frameshift_variant	1	C87
`Chr8:46306398`	`CT`	`C`	1bp_deletion	CDS_variant	1	C87
`Chr8:46306626`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr8:46306685`	`CTT`	`C`	2bp_deletion	frameshift_variant	4	A10,C16,C36,C73
`Chr8:46306685`	`CTT`	`C`	2bp_deletion	CDS_variant	4	A10,C16,C36,C73
`Chr8:46306967`	`C`	`CA`	1bp_insertion	frameshift_variant	35	A1,A11,A20,A24,A9,B1,B100,B104,B107,B129,B132,B138,B19,B29,B3,B36,B4,B46,B48,B50,B55,B65,B91,B94,C10,C2,C4,C48,C6,C74,C76,C79,C84,D3,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057779950.1

459 aa

230

459

Carboxyl_trans

PF01039 Carboxyl_trans 249-417 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057779950.1`	Pfam	`PF01039`	Carboxyl_trans	Family	249	417	1.5e-21	77.4	Carboxyl transferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057923967.1
ATGAATATTGCGTCCAACATGAAACTTGTGATTGGTCGTAAAACACCGATTTGCTTGTTGAGAGCCAATTCTATTTTCATAGATTTCTCGAGATATTTTCTTACGAAGTTTTGTTATTCTGATGATACTTTTTTAGTTAGGGATAGTAATGGAGATAGTTATTCTATCTATTTTGATATAGAAAATCAGATTTTTGAGATTGACAGCGATCATTCTTTTCTGAATGAACTAGAAAGTTATTTTTTTTGTAGTTATCGCAA...

CDS

1 records

下载 CDS FASTA

LOC130998551
ATGAATATTGCGTCCAACATGAAACTTGTGATTGGTCGTAAAACACCGATTTGCTTGTTGAGAGCCAATTCTATTTTCATAGATTTCTCGAGATATTTTCTTACGAAGTTTTGTTATTCTGATGATACTTTTTTAGTTAGGGATAGTAATGGAGATAGTTATTCTATCTATTTTGATATAGAAAATCAGATTTTTGAGATTGACAGCGATCATTCTTTTCTGAATGAACTAGAAAGTTATTTTTTTTGTAGTTATCGCAA...

Protein

1 records

下载 Protein FASTA

XP_057779950.1
MNIASNMKLVIGRKTPICLLRANSIFIDFSRYFLTKFCYSDDTFLVRDSNGDSYSIYFDIENQIFEIDSDHSFLNELESYFFCSYRNSSYMNNGSGSPNEDSLYNRYMYDTQSSWNNHITSCIDSYLQSQICIDTSIVSDSSDGYISRCIFDKRKTNSEGGGSSIPTRAKNSDLTLRERSSDLDATQKYRHLWVQCENCYGLNYKKFLQSKMNICEQCGYHLKISSSERIEVSIDPGTWDPMDEDMVSLDPIGFHSEEEP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器