当前解析结果
SmilChr08G004030| 统一新 Gene ID | SmilChr08G004030 |
|---|---|
| 名称 | SmilChr08G004030 |
| 描述 | uncharacterized SmilChr08G004030 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 48712439 - 48713885 / - |
| NCBI Gene ID | LOC130998585 |
|---|---|
| GeneID | 130998585 |
| locus_tag | - |
| NCBI Name | LOC130998585 |
| 原始查询 | LOC130998585 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ulp1 protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:832997]; symbol=AT5G28810; hit=AT5G28810; species=arabidopsis; confidence=weak |
| 产物 | Ulp1 protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:832997]; symbol=AT5G28810; hit=AT5G28810; species=arabidopsis; confidence=weak |
| Arabidopsis | AT5G28810 (AT5G28810)Ulp1 protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:832997] identity=32.5; qcov=0.238; evalue=6.86e-06; confidence=weak |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998585 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057779984.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057779984.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057779984.1 |
| 4 | Nuclear body | 核内小体 | 0.20000 | XP_057779984.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057779984.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:48712443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D7 |
Chr8:48712446 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B5,D9 |
Chr8:48712461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr8:48712465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A15 |
Chr8:48712482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr8:48712518 |
TGA |
T |
2bp_deletion | frameshift_variant | 11 | B13,B130,B28,B7,B80,C30,C62,C82,C83,D11,D6 |
Chr8:48712533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C67 |
Chr8:48712539 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | C11,C74,C75,C87 |
Chr8:48712547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B69,B79,C60,D2 |
Chr8:48712550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr8:48712552 |
G |
A |
EMS_canonical_SNV | stop_gained | 45 | A16,A18,A4,B1,B10,B104,B108,B122,B126,B137,B139,B15,B16,B22,B28,B3,B31,B40,B47,B54,B55,B57,B58,B6,B72,B73,B76,B78,B82,B92,B97,C20,C21,C29,C35,C37,C46,C48,C5,C63,C65,C66,C76,C84,D1 |
Chr8:48712567 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | B129,B89,C37 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。