当前解析结果
SmilChr01G001067| 统一新 Gene ID | SmilChr01G001067 |
|---|---|
| 名称 | SmilChr01G001067 |
| 描述 | uncharacterized SmilChr01G001067 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 22019541 - 22023684 / + |
| NCBI Gene ID | LOC130998612 |
|---|---|
| GeneID | 130998612 |
| locus_tag | - |
| NCBI Name | LOC130998612 |
| 原始查询 | LOC130998612 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os08g0202300; species=rice; confidence=weak |
| 产物 | hit=Os08g0202300; species=rice; confidence=weak |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=45.9; qcov=0.066; evalue=7.53e-13; confidence=weak |
| Rice | Os08g0202300- identity=32.2; qcov=0.287; evalue=1.33e-58; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity) |
| KEGG | - |
| Pfam | PF00078 (RVT_1); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998612 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057780030.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057780030.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057780030.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780030.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780030.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:22019543 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B81,D8 |
Chr1:22019558 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr1:22019578 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,B94,C71 |
Chr1:22019588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B105,C33,C69 |
Chr1:22019611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B105,C33,C69 |
Chr1:22019618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,A4,B73,B94,C71 |
Chr1:22019627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B7,C68,C87,D9 |
Chr1:22019657 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr1:22019660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:22019666 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B7,C68,C87 |
Chr1:22019666 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B7,C68,C87 |
Chr1:22019679 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A5,A8,B15,B40,B81,C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780030.1PF00078
RVT_1 663-822 aa
PF17919
RT_RNaseH_2 886-984 aa
PF17917
RT_RNaseH 914-1012 aa
PF13456
RVT_3 1064-1182 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780030.1 |
Pfam | PF00078 |
RVT_1 | Domain | 663 | 822 | 2.8e-33 | 116.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057780030.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 886 | 984 | 4.5e-25 | 88.3 | RNase H-like domain found in reverse transcriptase |
XP_057780030.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 914 | 1012 | 1e-19 | 71.3 | RNase H-like domain found in reverse transcriptase |
XP_057780030.1 |
Pfam | PF13456 |
RVT_3 | Domain | 1064 | 1182 | 4.3e-19 | 69.4 | Reverse transcriptase-like |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。