当前解析结果
SmilChr08G004139| 统一新 Gene ID | SmilChr08G004139 |
|---|---|
| 名称 | SmilChr08G004139 |
| 描述 | uncharacterized SmilChr08G004139 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 50404083 - 50407531 / - |
| NCBI Gene ID | LOC130998618 |
|---|---|
| GeneID | 130998618 |
| locus_tag | - |
| NCBI Name | LOC130998618 |
| 原始查询 | LOC130998618 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332]; symbol=AT3G51690; hit=AT3G51690; species=arabidopsis; confidence=low |
| 产物 | PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332]; symbol=AT3G51690; hit=AT3G51690; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G51690 (AT3G51690)PIF1 helicase [Source:NCBI gene (formerly Entrezgene);Acc:824332] identity=25.7; qcov=0.901; evalue=9.71e-15; confidence=low |
| Rice | Os04g0357300- identity=30.3; qcov=0.665; evalue=1.19e-08; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF21530 (Pif1_2B_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998618 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057780014.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057780014.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057780014.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780014.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780014.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:50404169 |
AC |
A |
1bp_deletion | frameshift_variant | 55 | A1,A19,A21,A6,B110,B118,B124,B13,B133,B135,B136,B2,B21,B25,B26,B3,B34,B36,B38,B39,B45,B47,B5,B50,B58,B59,B65,B66,B68,B69,B73,B76,B82,B89,B97,C2,C27,C3,C46,C48,C5,C52,C53,C55,C56,C64,C66,C74,C77,C82,C9,D10,D11,D2,D5 |
Chr8:50405630 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B102,B48,C39,C58 |
Chr8:50405703 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | A2,B60,B72 |
Chr8:50405703 |
C |
CT |
1bp_insertion | CDS_variant | 3 | A2,B60,B72 |
Chr8:50405749 |
GT |
G |
1bp_deletion | frameshift_variant | 140 | A1,A10,A13,A18,A19,A20,A21,A23,A25,A3,A4,A7,B1,B10,B103,B104,B107,B108,B110,B112,B115,B117,B118,B120,B122,B123,B124,B125,B126,B128,B129,B132,B135,B137,B140,B16,B17,B18,B19,B20,B22,B23,B24,B30,B33,B34,B35,B36,B37,B4,B41,B42,B44,B51,B52,B54,B55,B56,B57,B61,B63,B64,B66,B67,B68,B71,B72,B75,B76,B79,B8,B80,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B96,B98,C1,C10,C12,C13,C15,C16,C17,C18,C2,C20,C21,C22,C23,C25,C3,C30,C31,C32,C36,C37,C38,C4,C42,C43,C44,C45,C46,C47,C49,C50,C51,C53,C54,C57,C58,C60,C68,C69,C71,C73,C74,C75,C79,C8,C80,C82,C83,C86,C9,D11,D3,D4,D6,D7,D8,D9 |
Chr8:50405806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr8:50405883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C59 |
Chr8:50405913 |
CCG |
C |
2bp_deletion | frameshift_variant | 4 | B2,B7,B83,C78 |
Chr8:50405913 |
CCG |
C |
2bp_deletion | CDS_variant | 4 | B2,B7,B83,C78 |
Chr8:50405943 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B107 |
Chr8:50405943 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B107 |
Chr8:50406017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780014.1PF21530
Pif1_2B_dom 168-196 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780014.1 |
Pfam | PF21530 |
Pif1_2B_dom | Domain | 168 | 196 | 6e-07 | 29.8 | DNA helicase Pif1, 2B domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。