Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004386`

染色体: Chr08 坐标: 53608168-53621243 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004386`
名称	SmilChr08G004386
描述	uncharacterized SmilChr08G004386
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	53608168 - 53621243 / `+`

ID 对照

NCBI Gene ID	`LOC130998675`
GeneID	`130998675`
locus_tag	`-`
NCBI Name	`LOC130998675`
原始查询	`LOC130998675`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor [Source:NCBI gene (formerly Entrezgene);Acc:825321]; symbol=AT3G61480; hit=AT3G61480; species=arabidopsis; confidence=high
产物	Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor [Source:NCBI gene (formerly Entrezgene);Acc:825321]; symbol=AT3G61480; hit=AT3G61480; species=arabidopsis; confidence=high
Arabidopsis	`AT3G61480` (AT3G61480) Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor [Source:NCBI gene (formerly Entrezgene);Acc:825321] identity=76.7; qcov=1; evalue=0; confidence=high
Rice	`Os02g0786000` - identity=75.3; qcov=1; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0005515 (protein binding); GO:0005829 (cytosol); GO:0006886 (intracellular protein transport); GO:0034066 (Ric1-Rgp1 guanyl-nucleotide exchange factor complex); GO:0042147 (retrograde transport, endosome to Golgi)
KEGG	-
Pfam	PF07064 (RIC1); PF25440 (Beta-prop_RIC1_2nd)
InterPro	-
eggNOG	-
NR	GeneID:130998675

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057780072.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057780072.1`
3	Vesicle	囊泡	0.60000	`XP_057780072.1`
4	Cytosol	细胞质基质	0.40000	`XP_057780072.1`
5	Autophagic vesicle	Autophagic vesicle	0.20000	`XP_057780072.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:53608681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B112
`Chr8:53609191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C61
`Chr8:53609221`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B97,C75,D3,D6
`Chr8:53609243`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B58
`Chr8:53609285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C66
`Chr8:53609317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C24,C29
`Chr8:53609461`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,B29
`Chr8:53609849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:53609856`	`C`	`T`	EMS_canonical_SNV	stop_gained	70	A11,A13,A14,A23,A3,A6,B104,B105,B106,B107,B109,B110,B111,B112,B120,B124,B134,B136,B16,B20,B21,B22,B26,B27,B29,B31,B32,B39,B44,B48,B50,B63,B65,B72,B74,B75,B76,B79,B84,B94,C11,C12,C13,C14,C16,C17,C20,C27,C29,C3,C34,C35,C37,C40,C50,C52,C53,C55,C67,C69,C7,C71,C72,C78,C79,C80,D1,D2,D7,D8
`Chr8:53610409`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C45,D6
`Chr8:53610457`	`A`	`AT`	1bp_insertion	frameshift_variant	13	A13,A7,B124,B65,B75,B77,B86,B9,C14,C20,C64,C66,C73
`Chr8:53610732`	`C`	`T`	EMS_canonical_SNV	stop_gained	168	A11,A13,A14,A15,A18,A19,A20,A21,A22,A23,A25,A3,A6,A7,A8,A9,B1,B10,B100,B103,B104,B105,B106,B109,B11,B110,B111,B112,B113,B115,B117,B118,B120,B121,B122,B124,B125,B126,B128,B129,B130,B132,B134,B135,B136,B138,B139,B14,B140,B15,B16,B17,B19,B20,B21,B22,B25,B26,B27,B28,B29,B31,B32,B36,B37,B38,B39,B42,B43,B44,B48,B49,B51,B52,B57,B59,B6,B60,B61,B62,B63,B64,B65,B66,B68,B69,B71,B72,B74,B75,B76,B78,B79,B80,B81,B82,B84,B87,B89,B91,B93,B94,B97,B98,C1,C10,C11,C12,C13,C14,C16,C17,C19,C20,C21,C24,C25,C26,C27,C28,C29,C3,C31,C32,C33,C34,C35,C36,C37,C38,C39,C40,C41,C44,C47,C48,C50,C52,C54,C55,C56,C57,C59,C6,C60,C65,C67,C68,C69,C7,C70,C71,C72,C75,C76,C78,C79,C8,C80,C84,C86,C9,D1,D11,D2,D4,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780072.1

856 aa

428

856

Beta-prop_RIC1_2nd

RIC1

PF25440 Beta-prop_RIC1_2nd 160-488 aa PF07064 RIC1 495-667 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780072.1`	Pfam	`PF25440`	Beta-prop_RIC1_2nd	Repeat	160	488	5.9e-90	302.6	RIC1 second beta propeller domain
`XP_057780072.1`	Pfam	`PF07064`	RIC1	Repeat	495	667	2.2e-48	164.9	RIC1 C-terminal alpha solenoid region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924089.1
ATGATAAATCAAAATCAACAGATTCTTGCTGTTGGGACTCAAAAAGGTGCTGTTGAGCTGTATGAACTTGCAGATTCTGCATCACTTATTCACTCTGTGTCATTGCATGATTGGGGATATTCTGTGGAAGATACTGGTCCTGTCAATTGTATTGCTTGGACACCTGATAACTCTGCTTTCGCAATTGGATGGAAGTTAAGGGGACTTACTGTTTGGTCTGTCTCAGGCTGTCGTTTGATGTCTACAATCCGCCAGATAAG...

CDS

1 records

下载 CDS FASTA

LOC130998675
ATGATAAATCAAAATCAACAGATTCTTGCTGTTGGGACTCAAAAAGGTGCTGTTGAGCTGTATGAACTTGCAGATTCTGCATCACTTATTCACTCTGTGTCATTGCATGATTGGGGATATTCTGTGGAAGATACTGGTCCTGTCAATTGTATTGCTTGGACACCTGATAACTCTGCTTTCGCAATTGGATGGAAGTTAAGGGGACTTACTGTTTGGTCTGTCTCAGGCTGTCGTTTGATGTCTACAATCCGCCAGATAAG...

Protein

1 records

下载 Protein FASTA

XP_057780072.1
MINQNQQILAVGTQKGAVELYELADSASLIHSVSLHDWGYSVEDTGPVNCIAWTPDNSAFAIGWKLRGLTVWSVSGCRLMSTIRQISLSSASSPVIKPNQDFKYEPMMGGTSLMHWDEHGYRLYAMEEGSSERIVAFSFGKCCLNRGVSGTTYVRQVIYGEDRLLIVQSEDTDELKILHLNLPVSYILQNWPILHVAASKDGMYLAVAGLHGLILYDIRLKRWRVFGDVTQEQQIQCRGLLWLGKIVVVCNYVESSNTYE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器