Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G004512`

染色体: Chr08 坐标: 54751428-54752669 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G004512`
名称	SmilChr08G004512
描述	uncharacterized SmilChr08G004512
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	54751428 - 54752669 / `-`

ID 对照

NCBI Gene ID	`LOC130998693`
GeneID	`130998693`
locus_tag	`-`
NCBI Name	`LOC130998693`
原始查询	`LOC130998693`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838711]; symbol=AT1G21150; hit=AT1G21150; species=arabidopsis; confidence=low
产物	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838711]; symbol=AT1G21150; hit=AT1G21150; species=arabidopsis; confidence=low
Arabidopsis	`AT1G21150` (AT1G21150) Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:838711] identity=27.9; qcov=0.719; evalue=9.69e-27; confidence=low
Rice	`Os06g0224500` - identity=27.5; qcov=0.748; evalue=2.85e-24; confidence=low
GO	GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF02536 (mTERF)
InterPro	-
eggNOG	-
NR	GeneID:130998693

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057780087.1`
2	Nucleus	细胞核	0.00000	`XP_057780087.1`
3	Chromosome	染色体	0.00000	`XP_057780087.1`
4	Centromere	着丝粒	0.00000	`XP_057780087.1`
5	Chromatin	染色质	0.00000	`XP_057780087.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:54751719`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr8:54751723`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C68
`Chr8:54751765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B115,B129,C49,D11
`Chr8:54751790`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B100,B77,B87
`Chr8:54751794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B100,B77,B87
`Chr8:54751819`	`G`	`GA`	1bp_insertion	frameshift_variant	9	A3,B135,B136,B64,B74,B84,C11,C59,C69
`Chr8:54751841`	`T`	`TAA`	2bp_insertion	frameshift_variant	2	A3,B84
`Chr8:54751841`	`T`	`TAA`	2bp_insertion	CDS_variant	2	A3,B84
`Chr8:54751845`	`T`	`TA`	1bp_insertion	frameshift_variant	2	A3,B84
`Chr8:54751845`	`T`	`TA`	1bp_insertion	CDS_variant	2	A3,B84
`Chr8:54751881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B104,B129,D11
`Chr8:54751940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057780087.1

413 aa

206

413

mTERF

PF02536 mTERF 67-195 aa PF02536 mTERF 166-356 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057780087.1`	Pfam	`PF02536`	mTERF	Family	67	195	1.1e-26	94.2	mTERF
`XP_057780087.1`	Pfam	`PF02536`	mTERF	Family	166	356	1.1e-26	94.2	mTERF

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057924104.1
ATGATTGCAACTGCACGCAGGAATCTCTCCTGTTTATTTGCAAACCCTAATTCATTTCTCTGCAACTCCAATGCTCATTTCTTCCCGTCAATCCATTTCTTCTCCACTTGGAGGGTGGAAAACCCTAACCCTGAAATCCACGATCTATTGCTCAACAAATACCAATTTCATCCTGTTTTAGCTTCACTAACTTCATCGGCTTTACCTAAATCTAGTTGCCCCATAAGAGCTGATTCAGTAGTGTCATTCCTCAAAGAGAA...

CDS

1 records

下载 CDS FASTA

LOC130998693
ATGATTGCAACTGCACGCAGGAATCTCTCCTGTTTATTTGCAAACCCTAATTCATTTCTCTGCAACTCCAATGCTCATTTCTTCCCGTCAATCCATTTCTTCTCCACTTGGAGGGTGGAAAACCCTAACCCTGAAATCCACGATCTATTGCTCAACAAATACCAATTTCATCCTGTTTTAGCTTCACTAACTTCATCGGCTTTACCTAAATCTAGTTGCCCCATAAGAGCTGATTCAGTAGTGTCATTCCTCAAAGAGAA...

Protein

1 records

下载 Protein FASTA

XP_057780087.1
MIATARRNLSCLFANPNSFLCNSNAHFFPSIHFFSTWRVENPNPEIHDLLLNKYQFHPVLASLTSSALPKSSCPIRADSVVSFLKENGFTATQLQKVVAYFDYRVLGFTIETMNFKFNVFRNLGLCPKGIAKIISENPVILHSNYEKRIIPRLSTLKCLLGSDHDVARLLKRRSHFLLINLEETLLPNMEILKSYSIPMELIRLHLLQLRPRFFLLDPDTVRRSVVWTIEFGIPHTSAVFIQAANLFTHTSEEMWEVKAQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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