当前解析结果
SmilChr08G004528| 统一新 Gene ID | SmilChr08G004528 |
|---|---|
| 名称 | SmilChr08G004528 |
| 描述 | uncharacterized SmilChr08G004528 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 54824367 - 54834975 / - |
| NCBI Gene ID | LOC130998701 |
|---|---|
| GeneID | 130998701 |
| locus_tag | - |
| NCBI Name | LOC130998701 |
| 原始查询 | LOC130998701 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=37.7; qcov=0.139; evalue=1.54e-22; confidence=weak |
| Rice | Os12g0142900- identity=40.8; qcov=0.149; evalue=1.01e-28; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF03732 (PEG10_N-capsid); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF17919 (RT_RNaseH_2); PF19259 (Ty3_capsid); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998701 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057780096.1 |
| 2 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057780096.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057780096.1 |
| 4 | Nucleus | 细胞核 | 0.40000 | XP_057780096.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057780096.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:54824394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:54824448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:54824470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr8:54832306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B119,B44,B78 |
Chr8:54832339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B110,B16 |
Chr8:54832341 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:54832342 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B110,B16 |
Chr8:54832393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B119,B61 |
Chr8:54832396 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr8:54832420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B42,B43,B92 |
Chr8:54832521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr8:54832532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780096.1PF19259
Ty3_capsid 38-199 aa
PF03732
PEG10_N-capsid 39-117 aa
PF00098
zf-CCHC 298-314 aa
PF08284
RVP_2 373-499 aa
PF13650
Asp_protease_2 394-481 aa
PF13975
gag-asp_proteas 394-483 aa
PF30863
PRO_PEG10-RTL1 403-507 aa
PF17919
RT_RNaseH_2 688-747 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780096.1 |
Pfam | PF19259 |
Ty3_capsid | Domain | 38 | 199 | 2.4e-07 | 31.1 | Ty3 transposon capsid-like protein |
XP_057780096.1 |
Pfam | PF03732 |
PEG10_N-capsid | Domain | 39 | 117 | 9.7e-09 | 36.2 | Retrotransposon-derived protein PEG10, N-terminal capsid-like domain |
XP_057780096.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 298 | 314 | 1e-05 | 26.1 | Zinc knuckle |
XP_057780096.1 |
Pfam | PF08284 |
RVP_2 | Domain | 373 | 499 | 2.9e-27 | 95.8 | Retroviral aspartyl protease |
XP_057780096.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 394 | 481 | 2.8e-09 | 38.2 | Aspartyl protease |
XP_057780096.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 394 | 483 | 1.1e-08 | 36.2 | gag-polyprotein putative aspartyl protease |
XP_057780096.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 403 | 507 | 4.2e-11 | 44.0 | PEG10/RTL1 protease domain |
XP_057780096.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 688 | 747 | 6.1e-18 | 65.4 | RNase H-like domain found in reverse transcriptase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。