当前解析结果
SmilChr08G004533| 统一新 Gene ID | SmilChr08G004533 |
|---|---|
| 名称 | SmilChr08G004533 |
| 描述 | translationally-controlled tumor protein homolog |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 54938826 - 54945564 / + |
| NCBI Gene ID | LOC130998705 |
|---|---|
| GeneID | 130998705 |
| locus_tag | - |
| NCBI Name | LOC130998705 |
| 原始查询 | LOC130998705 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | translationally-controlled tumor protein homolog |
| 产物 | translationally-controlled tumor protein homolog |
| Arabidopsis | AT3G16640 (TCTP)translationally controlled tumor protein [Source:NCBI gene (formerly Entrezgene);Acc:820916] identity=46.1; qcov=0.962; evalue=1.49e-26; confidence=medium |
| Rice | Os11g0660500 (OsTCTP)- identity=44.5; qcov=0.962; evalue=1.12e-27; confidence=medium |
| GO | GO:0005509 (calcium ion binding); GO:0005737 (cytoplasm) |
| KEGG | - |
| Pfam | PF00838 (TCTP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998705 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057780100.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057780100.1 |
| 3 | Chromosome | 染色体 | 0.20000 | XP_057780100.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057780100.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057780100.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:54938877 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,C4 |
Chr8:54938898 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B94,C31,C4,C42 |
Chr8:54938904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B94,C31,C4,C42 |
Chr8:54945103 |
C |
T |
EMS_canonical_SNV | stop_gained | 154 | A1,A10,A13,A14,A15,A16,A18,A2,A20,A24,A25,A4,A8,A9,B1,B101,B102,B104,B105,B106,B107,B11,B110,B112,B113,B114,B117,B119,B12,B120,B121,B122,B123,B125,B128,B13,B132,B134,B136,B137,B138,B140,B16,B19,B2,B21,B22,B23,B25,B26,B27,B29,B3,B34,B37,B38,B39,B4,B41,B42,B43,B45,B46,B47,B48,B51,B52,B53,B55,B56,B58,B61,B62,B63,B64,B65,B66,B67,B68,B69,B70,B73,B75,B78,B8,B83,B85,B88,B9,B90,B92,B95,B96,B97,B98,C10,C13,C14,C15,C16,C17,C18,C21,C23,C28,C29,C3,C32,C33,C34,C38,C39,C4,C41,C44,C45,C46,C47,C52,C55,C56,C59,C6,C60,C61,C65,C66,C68,C71,C72,C73,C74,C75,C76,C8,C80,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9 |
Chr8:54945248 |
C |
T |
EMS_canonical_SNV | stop_gained | 45 | A20,A3,A4,B10,B106,B115,B118,B119,B138,B15,B2,B22,B23,B24,B28,B38,B39,B40,B45,B46,B47,B48,B5,B50,B58,B60,B63,B75,B78,B87,C22,C27,C30,C31,C37,C38,C42,C54,C65,C76,C79,C84,D10,D3,D5 |
Chr8:54945253 |
C |
CA |
1bp_insertion | frameshift_variant | 65 | A15,A16,A2,A8,A9,B101,B104,B106,B107,B110,B113,B117,B118,B119,B12,B125,B13,B132,B134,B136,B140,B16,B21,B26,B27,B38,B39,B4,B41,B43,B45,B47,B48,B52,B55,B66,B67,B68,B69,B73,B78,B83,B98,C10,C13,C15,C17,C18,C21,C32,C4,C41,C46,C56,C61,C65,C72,C76,C86,D1,D3,D4,D6,D7,D9 |
Chr8:54945294 |
AG |
A |
1bp_deletion | frameshift_variant | 4 | B106,B110,B119,B125 |
Chr8:54945294 |
AG |
A |
1bp_deletion | CDS_variant | 4 | B106,B110,B119,B125 |
Chr8:54945363 |
A |
AG |
1bp_insertion | frameshift_variant | 9 | A8,B104,B106,B110,B113,B47,C4,C56,D4 |
Chr8:54945442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780100.1PF00838
TCTP 23-57 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780100.1 |
Pfam | PF00838 |
TCTP | Domain | 23 | 57 | 1.8e-12 | 48.6 | Translationally controlled tumour protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。