当前解析结果
SmilChr08G004543| 统一新 Gene ID | SmilChr08G004543 |
|---|---|
| 名称 | SmilChr08G004543 |
| 描述 | cytochrome P450 71A1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 55031379 - 55033088 / - |
| NCBI Gene ID | LOC130998708 |
|---|---|
| GeneID | 130998708 |
| locus_tag | - |
| NCBI Name | LOC130998708 |
| 原始查询 | LOC130998708 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 71A1-like |
| 产物 | cytochrome P450 71A1-like |
| Arabidopsis | AT3G26330 (CYP71B37)cytochrome P450, family 71, subfamily B, polypeptide 37 [Source:NCBI gene (formerly Entrezgene);Acc:822237] identity=38.3; qcov=0.596; evalue=3.06e-34; confidence=medium |
| Rice | Os06g0641600- identity=34.3; qcov=0.604; evalue=7.62e-32; confidence=low |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998708 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057780102.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057780102.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780102.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780102.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780102.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:55031417 |
G |
GCA |
2bp_insertion | frameshift_variant | 1 | C87 |
Chr8:55031417 |
G |
GCA |
2bp_insertion | CDS_variant | 1 | C87 |
Chr8:55031477 |
G |
GA |
1bp_insertion | frameshift_variant | 7 | B106,B113,B54,B81,C19,C67,C77 |
Chr8:55031481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr8:55031735 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | B104 |
Chr8:55031735 |
CTT |
C |
2bp_deletion | CDS_variant | 1 | B104 |
Chr8:55031746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr8:55031764 |
TC |
T |
1bp_deletion | frameshift_variant | 9 | A18,B37,B54,B89,C17,C61,C80,C83,C9 |
Chr8:55031792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,C18 |
Chr8:55031806 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C21,C36 |
Chr8:55031815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B106,B91 |
Chr8:55031816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780102.1PF00067
p450 4-99 aa
PF00067
p450 118-161 aa
PF00067
p450 166-262 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780102.1 |
Pfam | PF00067 |
p450 | Domain | 4 | 99 | 6.3e-61 | 207.3 | Cytochrome P450 |
XP_057780102.1 |
Pfam | PF00067 |
p450 | Domain | 118 | 161 | 6.3e-61 | 207.3 | Cytochrome P450 |
XP_057780102.1 |
Pfam | PF00067 |
p450 | Domain | 166 | 262 | 6.3e-61 | 207.3 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。