当前解析结果
SmilChr01G004017| 统一新 Gene ID | SmilChr01G004017 |
|---|---|
| 名称 | SmilChr01G004017 |
| 描述 | protease Do-like 2, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 58560346 - 58570392 / + |
| NCBI Gene ID | LOC130998729 |
|---|---|
| GeneID | 130998729 |
| locus_tag | - |
| NCBI Name | LOC130998729 |
| 原始查询 | LOC130998729 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protease Do-like 2, chloroplastic |
| 产物 | protease Do-like 2%2C chloroplastic |
| Arabidopsis | AT2G47940 (DEG2)DEGP protease 2 [Source:NCBI gene (formerly Entrezgene);Acc:819406] identity=69.2; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0147500 (OsDegp6)- identity=72.7; qcov=0.833; evalue=0; confidence=high |
| GO | GO:0004252 (serine-type endopeptidase activity); GO:0005515 (protein binding); GO:0006508 (proteolysis) |
| KEGG | - |
| Pfam | PF00089 (Trypsin); PF13180 (PDZ_2); PF13365 (Trypsin_2); PF17815 (PDZ_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130998729 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057780122.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057780122.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057780122.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057780122.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057780122.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:58560567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B22,B41 |
Chr1:58561327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A22,B51,B69,B85 |
Chr1:58562890 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B62,B70,C41,C52 |
Chr1:58562891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr1:58565273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,B130 |
Chr1:58565306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A19,B118,B137,C19 |
Chr1:58565314 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B106,C78 |
Chr1:58565324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr1:58566819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B22,B41 |
Chr1:58568714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B62,B70,C41,C52 |
Chr1:58569090 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr1:58569194 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057780122.1PF00089
Trypsin 135-317 aa
PF13365
Trypsin_2 156-294 aa
PF13180
PDZ_2 334-432 aa
PF17815
PDZ_3 441-597 aa
XP_057780127.1PF00089
Trypsin 135-317 aa
PF13365
Trypsin_2 156-294 aa
PF13180
PDZ_2 334-432 aa
PF17815
PDZ_3 441-583 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057780122.1 |
Pfam | PF00089 |
Trypsin | Domain | 135 | 317 | 2.7e-25 | 90.2 | Trypsin |
XP_057780122.1 |
Pfam | PF13365 |
Trypsin_2 | Domain | 156 | 294 | 8.1e-27 | 95.5 | Trypsin-like peptidase domain |
XP_057780122.1 |
Pfam | PF13180 |
PDZ_2 | Domain | 334 | 432 | 4.2e-07 | 30.9 | PDZ domain |
XP_057780122.1 |
Pfam | PF17815 |
PDZ_3 | Domain | 441 | 597 | 2.4e-41 | 141.6 | PDZ domain |
XP_057780127.1 |
Pfam | PF00089 |
Trypsin | Domain | 135 | 317 | 2.6e-25 | 90.3 | Trypsin |
XP_057780127.1 |
Pfam | PF13365 |
Trypsin_2 | Domain | 156 | 294 | 7.6e-27 | 95.6 | Trypsin-like peptidase domain |
XP_057780127.1 |
Pfam | PF13180 |
PDZ_2 | Domain | 334 | 432 | 5.3e-07 | 30.5 | PDZ domain |
XP_057780127.1 |
Pfam | PF17815 |
PDZ_3 | Domain | 441 | 583 | 2e-44 | 151.6 | PDZ domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。